|
Top five motifs in 5' intergenic regions of T. parva and T. annulata |
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| Consensus |
Width |
Bits |
E-value |
Sites |
|
|
|
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| T. parva Motif 1 |
HDWTYCCCCATVVR |
14 |
16.0 |
5.7e-472 |
639 |
| 2 |
WAATGTGTARR |
11 |
13.6 |
5.2e-414 |
1199 |
| 3 |
BDRGATTCCAY |
11 |
16.0 |
8.5e-108 |
298 |
| 4 |
CCBCBRSARGGAGCY |
15 |
24.2 |
3.7e-048 |
39 |
| 5 |
GCTCCCKCYWGGSG |
14 |
26.2 |
1.2e-019 |
19 |
|
|
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| T. annulata Motif 1 |
WTTCCCCATNND |
12 |
15.5 |
4.1e-388 |
615 |
| 2 |
WAATGTGTAAW |
11 |
13.3 |
1.1e-348 |
1173 |
| 3 |
TGTTTGTTCTGATGG |
15 |
27.2 |
7.1e-140 |
56 |
| 4 |
BDRGATTCCAY |
11 |
15.8 |
8.8e-103 |
302 |
| 5 |
GTAATATTTCTGTAA |
15 |
23.7 |
5.0e-096 |
62 |
|
Motifs are identified by MEME and their consensus sequences are shown here using IUPAC (International union of pure and applied chemistry) nucleic acid codes. Information content in bits is calculated based on the first-order Markov background model. The E-value estimates the number of motifs with the same width and number of occurrence that would have equal or higher likelihood in the same number of random sequences generated by the background model. Sites refer to the number of sequences that MEME used to build each motif model. | |||||
Guo and Silva BMC Genomics 2008 9:582 doi:10.1186/1471-2164-9-582 |
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