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Table 4
FLcDNAs corresponding to transcripts most strongly repressed by forest tent caterpillar (FTC) feeding [fold-change (FC) ≥ 2.0, P value < 0.05, Q value < 0.05]
				NR BLASTP best match		FTC feeding @ 24 h
15.5 K Array ID	Matching FLcDNA ID	GenBank ID	FL status/ORF size (aa)	GenBank accession, gene name, species	BLAST score	FC	P	Q

WS0162_B18	WS01227_D07	EF147075	FL/465	AAX84673.1, cysteine protease, Manihot esculenta	782	0.33	<0.001	<0.001
WS0112_D20	WS0112_D20	EF145637	FL/99	At1g67910, hypothetical protein, Arabidopsis thaliana	69	0.34	<0.001	0.001
WS0126_C06	WS0126_C06	EF147942	FL/121	At2g45180, protease inhibitor/lipid transfer protein, A. thaliana	108	0.34	0.018	0.038
WS0131_P03	WS0131_P03^a	EF148510	FL/303	CAN63090.1, zinc finger transcription factor, Vitis vinifera	135	0.36	<0.001	0.001
WS0178_F11	WS01228_M08	EF147174	5' trunc./106	At1g22770, gigantea protein, A. thaliana	150	0.38	<0.001	0.002
WS0127_F15	WS0127_F15	EF148074	FL/173	CAN68427.1, hypothetical protein, V. vinifera	207	0.40	<0.001	0.001
WS0121_B24	WS0128_M21	EF148217	FL/139	AAU03358.1, acyl carrier protein, Lycopersicon esculentum	119	0.41	<0.001	<0.001
WS0147_J04	WS0134_M10	EF148605	n.a.	No protein matches	n.a.	0.41	0.004	0.014
WS0158_G10	WS0128_E13	EF148173	5' trunc./628	At1g56070, elongation factor, A. thaliana	1239	0.41	0.001	0.005
WS0152_E14	WS0112_O08^a	EF145715	FL/252	ABH09330.1, aquaporin, V. vinifera	375	0.42	<0.001	0.003
WS0143_B24	WS01227_O15	EF147121	FL/267	At1g06460, small heat shock protein, A. thaliana	146	0.42	<0.001	0.001
WS0127_G18	WS0127_G18	EF148081	n.a.	No protein matches	n.a.	0.43	<0.001	<0.001
WS0182_D02	WS01226_N23	EF147055	FL/335	CAN75691.1, methyltransferase, V. vinifera	534	0.43	0.001	0.005
WS0124_D16	WS0124_D16	EF147668	FL/164	At3g62550, universal stress protein, A. thaliana	188	0.44	<0.001	0.001
WS0163_G24	WS0115_E02	EF146059	FL/341	AAD56659.1, malate dehydrogenase, Glycine max	566	0.45	0.003	0.010
WS0175_O14	WS01313_J01^a	EF148349	FL/239	CAN63226.1, hypothetical protein, V. vinifera	313	0.45	<0.001	0.001
WS0178_N22	WS01111_H24	EF144589	FL/161	ABG27020.1, SKP1-like ubiquitin-protein ligase, Medicago truncatula	219	0.46	<0.001	<0.001
WS0121_H19	WS0121_H19	EF146882	FL/350	AAW66657.1, thiamine biosynthetic enzyme, Picrorhiza kurrooa	539	0.48	0.005	0.016
WS0206_B21	WS0131_B11	EF148494	FL/133	CAA59409.1, photosystem II reaction center protein, Spinacia oleracea	140	0.48	0.001	0.006
WS0155_M12	WS0136_E20	EF148683	FL/234	CAN60736.1, hypothetical protein, V. vinifera	313	0.48	0.001	0.007
WS0152_F02	WS01117_K24	EF144742	FL/384	CAN83255.1, CCCH-type zinc finger protein, V. vinifera	432	0.49	<0.001	0.002
WS01224_P10	WS0124_L08^a	EF147742	FL/137	CAA28450.1, photosystem II 10 kDa polypeptide, Solanum tuberosum	191	0.49	<0.001	0.003
WS0115_N05	WS0115_N05	EF146146	FL/250	AAM21317.1, auxin-regulated protein, Populus tremula × tremuloides	449	0.50	0.005	0.016
WS0125_F02	WS0125_F02	EF147829	FL/516	At1g60590, polygalacturonase, A. thaliana	715	0.50	0.001	0.005

^aMultiple FLcDNAs match to the same microarray EST, a complete list of matching FLcDNAs is provided elsewhere [see Additional file 2].
Ralph et al. BMC Genomics 2008 9:57 doi:10.1186/1471-2164-9-57

Table 4