Table 1

Data statistics of PlantPAN.

Arabidopsis

Rice

Maize

Other plants


No. of gene transcripts

35,351

62,827

29,759

-


No. of promoter sequences

35,351

62,827

29,759

-


No. of experimental promoter sequences

13

6

16

167a


No. of transcripts containing putative CpG/CpNpG Islands (predicted by CpGProD)

6,912

60,470

16,110

-


No. of transcripts containing putative tandem repeats (predicted by TRF)

18,080

45,409

11,535

-


No. of plant transcription factors used in PlantPANb

197

75

59

260c


a Including medicago, barley, Catharanthus roseus, cider tree, french bean, snapdragon, horseradish, maize, parsley, pea, petunia, Brassica napus, soybean, potato, tobacco, tomato, and wheat.

b Collecting 591 plant transcription factors from PLACE [16], TRANSFAC public release 7.0 [12], AGRIS [17], and JASPER [18].

c Including bean, barley, carrot, cotton, medicago, parsley, pea, petunia, potato, rape, snapdragon, soybean, sweet potato, tobacco, tomato, wheat et al.

Chang et al. BMC Genomics 2008 9:561   doi:10.1186/1471-2164-9-561

Open Data