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Basic genomic features of four putative allergen genes identified from the MB1-73 plant (F1 hybrid between 'Texas' almond and 'Earlygold' peach) |
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| Genes1 |
Total length2 |
ORF |
Exon 12 |
Intron 12 |
Exon 22 |
Intron 22 |
Exon 3 |
GenBank accessions3 |
Bin-map4 |
|
|
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| Pru p/du 1.01 |
586 |
483 |
184 |
98 |
299 |
EU424239, EU424240 |
1:14 |
||
| Pru p/du 1.02 |
772/762 |
483 |
184 |
233/223 |
299 |
EU424241, EU424242 |
1:14 |
||
| Pru p/du 1.03 |
624 |
483 |
184 |
105/102 |
299 |
EU424243, EU424244 |
1:14 |
||
| Pru p/du 1.04 |
615/622 |
480 |
184 |
124/131 |
296 |
EU424245, EU424246 |
1:14 |
||
| Pru p/du 1.05 |
1503/1510 |
483 |
184 |
135 |
299 |
EU424247, EU424248 |
1:14 |
||
| Pru p/du 1.06A |
1871/2096 |
483 |
184 |
105/109 |
299 |
EU424251, EU424252 |
1:14 |
||
| Pru p/du 1.06B |
589 |
483 |
184 |
105 |
299 |
EU424249, EU424250 |
1:14 |
||
| Pru p 1.06C |
1432 |
483 |
184 |
109 |
299 |
EU424253 |
1:14 |
||
| Pru p/du 2.01A |
882/879 |
741 |
61 |
105/108 |
680 |
EU424256, EU424257 |
3:37 |
||
| Pru p/du 2.01B |
892 |
741 |
61 |
118 |
680 |
EU424258, EU424259 |
3:37 |
||
| Pru p/du 2.02 |
1373/1271 |
741/729 |
52/58 |
118/180 |
689/671 |
EU424254, EU424255 |
7:25 |
||
| Pru p/du 2.03 |
1296/1290 |
783/834 |
61 |
160 |
722/773 |
EU424260, EU424261 |
8:41 |
||
| Pru p/du 2.04 |
1799/1825 |
993 |
61 |
110 |
694 |
678/704 |
238 |
EU424262, EU424263 |
1:50 |
| Pru p/du 3.01 |
645 |
354 |
344 |
193 |
10 |
EU424264, EU424265 |
6:74 |
||
| Pru p/du 3.02 |
514/513 |
372 |
362 |
98/97 |
10 |
EU424266, EU424267 |
6:74 |
||
| Pru p/du 3.03 |
528/527 |
351 |
341 |
104/103 |
10 |
EU424268, EU424269 |
6:74 |
||
| Pru p/du 4.01 |
1041 |
396 |
123 |
391 |
138 |
210 |
135 |
EU424270, EU424271 |
1:73 |
| Pru p/du 4.02 |
754 |
396 |
123 |
209 |
138 |
131 |
135 |
EU424272, EU424273 |
7:56 |
|
1 p and du represent peach (P. persica) and almond (P. dulcis), respectively. 2 x/y indicates two different DNA lengths from 'Texas' and 'Earlygold' allele, the first is for 'Texas'. 3 Two accessions are from alleles of 'Texas' almond and 'Earlygold' peach respectively. 4 Bin map position is indicated by a first digit corresponding to the linkage group number followed by a colon and the distance in cM from the top of the linkage group to the last marker of this bin (i.e. 1:14 is linkage group 1 position 14 cM) | |||||||||
Chen et al. BMC Genomics 2008 9:543 doi:10.1186/1471-2164-9-543 |
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