Research article
Analysis of the Pythium ultimum transcriptome using Sanger and Pyrosequencing approaches
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* Corresponding author: C Robin Buell buell@msu.edu
1 The J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850 USA
2 The Sainsbury Laboratory, Colney Lane, Norwich, NR4 7UH, UK
3 Colorado State University, Department of Bioagricultural Sciences and Pest Management, C129 Plant Sciences, Ft. Collins CO 80523, USA
4 Michigan State University, Department of Plant Biology, East Lansing MI 48824, USA
5 Agriculture and Agri-Food Canada, Ottawa, ON, K1A 0C6, Canada
BMC Genomics 2008, 9:542 doi:10.1186/1471-2164-9-542
Published: 15 November 2008Additional files
Additional file 1:
Hybrid assembly singleton reads derived solely from Sanger reads.
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Additional file 2:
Hybrid assemblies derived solely from Sanger reads.
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Additional file 3:
Top 50 largest assemblies from the hybrid assembly.
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Additional file 4:
Top 50 largest assemblies from 454-pyrosequencing only assembly.
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Additional file 5:
Top 50 largest assemblies from Sanger only sequence assembly.
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Additional file 6:
Alignments of P. ultimum sequences to effectors and Crinkler proteins.
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Additional file 7:
Assemblies with similarity to protease inhibitors and elicitins.
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Additional file 8:
Chlamydomonasflagellar proteins identified in the hybrid EST assembly.
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Additional file 9:
Simple Sequence Repeats identified in the hybrid assembly.
Format: XLS Size: 33KB Download file
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