Table 7 |
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|
Analysis of microarray hybridisation data from 19 unsequenced test strains. The CGH microarray data was cleaned, normalised and cut-off assessed using the MKD method, then the Pearson's correlation co-efficient was calculated for comparison between each test and reference strain. The highest correlation is shown below. The strain ID, source and slide codes for each of the test strains is included |
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|
Strain |
Source |
Slide replicate numbers |
Reference strain most correlated with |
|||
|
|
||||||
|
Strain |
Pearson Correlation Coefficient |
|||||
|
|
||||||
|
0023/99 |
Bovine |
13248842 |
12842688 |
EDL933 |
0.78 |
|
|
0059/99 |
Bovine |
12842681 |
13252965 |
EDL933 |
0.83 |
|
|
0144/99 |
Ovine |
12842593 |
13248844 |
EDL933 |
0.83 |
|
|
0445/99 |
Ovine |
12842605 |
12842576 |
EDL933 |
0.85 |
|
|
0796/00 |
Bovine |
12842610 |
12842591 |
EDL933 |
0.78 |
|
|
1299/00 |
Human |
12842608 |
13248843 |
EDL933 |
0.83 |
|
|
1463/00 |
Human |
12842620 |
12842580 |
EDL933 |
0.85 |
|
|
1464/00 |
Human |
12842621 |
12842581 |
EDL933 |
0.79 |
|
|
1471/00 |
Human |
13252961 |
13248846 |
12842615 |
EDL933 |
0.81 |
|
1472/00 |
Human |
13252963 |
12842582 |
12842614 |
EDL933 |
0.86 |
|
1484/00 |
Bovine (Burger) |
12842669 |
13248838 |
EDL933 |
0.66 |
|
|
1489/00 |
Bovine (Steak) |
12842668 |
12842577 |
EDL933 |
0.75 |
|
|
1812/00 |
Bovine |
12842666 |
12842578 |
EDL933 |
0.81 |
|
|
1585/00 |
Bovine |
12842603 |
12842586 |
EDL933 |
0.88 |
|
|
0945/00 |
Bovine |
12842682 |
12842583 |
EDL933 |
0.79 |
|
|
0330/01 |
Bovine |
12842680 |
13248839 |
EDL933 |
0.84 |
|
|
0864/00 |
Bovine |
13248841 |
12842613 |
EDL933 |
0.82 |
|
|
1070/00 |
Bovine |
12842678 |
13248840 |
Sakai |
0.59 |
|
|
1176/00 |
Bovine |
12842601 |
12842585 |
MG1655 |
0.85 |
|
|
|
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|
Carter et al. BMC Genomics 2008 9:53 doi:10.1186/1471-2164-9-53 |
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