Table 2

Numbers of genes in the intersections of gene sets generated by the two experiments

Over-expressed in melan-a v B16

Under-expressed in melan-a v B16

Total


Upregulated by RA treatment

71

14

85

Downregulated by RA treatment

16

132

151

Total

87

149

233


In both the experiment comparing gene expression in RA-treated B16 cells to that in untreated B16 cells, and the experiment comparing gene expression in melan-a cells to that in B16 cells, significance is determined by SAM with median false discovery rate of 10%, and a minimum fold change of 1.5. Table entries in bold represent genes for which treatment by RA changes the expression in B16 cells towards that in melan-a cells.

Estler et al. BMC Genomics 2008 9:478   doi:10.1186/1471-2164-9-478

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