|
Signal peptide-containing proteins in individual and core secretomes. Only sequences containing 0–2 transmembrane domains (TMDs) as predicted by TMHMM are shown. |
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| Function |
CcI3* |
ACN* |
EAN* |
Core secretome† |
Core Frankia-specific‡ |
|
|
|||||
| Cell Wall/Growth |
14 (4) |
13 (6) |
15 (8) |
17 |
6 |
| Hydrolase |
10 (9) |
17 (9) |
21 (6) |
12 |
4 |
| Metabolism |
42 (99) |
55 (159) |
56 (163) |
59 |
7 |
| Regulation |
10 (15) |
13 (19) |
11 (20) |
10 |
2 |
| Solute-binding |
18 (1) |
28 (8) |
62 (12) |
14 |
4 |
| Hypothetical |
103 (110) |
153 (177) |
181 (175) |
49 |
29 |
|
|
|||||
| Total |
197 (238) |
279 (378) |
346 (384) |
161 |
52 |
|
* Numbers outside parentheses are predicted to contain signal peptides by both SignalP methods (NN and HMM); numbers inside parentheses are additional proteins predicted to contain a signal peptide by only one method. † Orthologous proteins present in all strains with a signal peptide predicted in two or three strains ‡ Frankia-specific: when CcI3 sequences from the core secretome list were BLAST searched against four closest actinobacterial relatives, no hits retrieved at an E value cutoff of 10-20 | |||||
Mastronunzio et al. BMC Genomics 2008 9:47 doi:10.1186/1471-2164-9-47 |
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