|
Gene pairs in human genome that share most 5' exons and promoters with little coding similarities |
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| Gene 1 |
Chr. |
Strand |
Gene 1 start * |
Gene 2 |
Gene 2 start |
Coexpression Correlation Coefficient |
P-value (**) |
Note |
|
|
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| LEPOT |
1 |
+ |
65658906 |
LEPR |
65658905 |
-0.15 |
0.73 (103) |
|
|
|
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| KLHL23 |
2 |
+ |
170259246 |
PHOSPHO2 |
170259220 |
N/A |
N/A (0) |
|
|
|
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| NAT6 |
3 |
- |
50308836 |
HYAL3 |
50305265 |
0.33 |
0.16 (103) |
|
|
|
||||||||
| TMED7 |
5 |
- |
114977101 |
TICAM2 |
114942246 |
0.56 |
0.04 (105) |
|
|
|
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| ITGA1 |
5 |
+ |
52119892 |
PELO |
52119530 |
0.42 |
0.09 (95) |
|
|
|
||||||||
| MUTED |
6 |
- |
7959212 |
TXNDC5 |
7826748 |
0.18 |
0.30 (107) |
|
|
|
||||||||
| HIST1H2AD |
6 |
- |
26306990 |
HIST1H3D |
26304990 |
0.77 |
<0.01 (94) |
Little coding similarity |
|
|
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| LOC552891 |
9 |
+ |
113433486 |
DNAJC25 |
113433483 |
N/A |
N/A (0) |
One is a fusion gene of two adjacent genes |
|
|
||||||||
| TRIM6-TRIM34 |
11 |
+ |
5574461 |
TRIM6 |
5573922 |
N/A |
N/A |
One is a fusion gene of two adjacent genes |
|
|
||||||||
| HOXC4 |
12 |
+ |
52696908 |
HOXC6 |
52696908 |
0.54 |
0.04 (103) |
some coding similarity; HOXC5 also shares exon 1 with these two genes |
|
|
||||||||
| ANG |
14 |
+ |
20222608 |
RNASE4 |
20222211 |
0.77 |
<0.01 (104) |
|
|
|
||||||||
| SPESP1 |
15 |
+ |
67009918 |
NOX5 |
67009917 |
0.17 |
0.32 (68) |
|
|
|
||||||||
| SULT1A4 |
16 |
+ |
29373901 |
GIYD2 |
29373375 |
N/A |
N/A (0) |
|
|
|
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| SULT1A3 |
16 |
+ |
30113243 |
GIYD1 |
30112717 |
N/A |
N/A (0) |
Duplication of the SULT1A4/GIYD2 pair |
|
|
||||||||
| TNFSF12-TNFSF13 |
17 |
+ |
7393139 |
TNFSF12 |
7393098 |
N/A |
N/A (0) |
One is a fusion gene of two adjacent genes; structure conserved in mouse |
|
|
||||||||
| NME1 |
17 |
+ |
46585918 |
NME1-NME2 |
46585918 |
N/A |
N/A (0) |
One is a fusion gene of two adjacent genes |
|
|
||||||||
| NUP62 |
19 |
- |
55101893 |
IL4I1 |
55084722 |
-0.11 |
0.68 (106) |
|
|
|
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| PEG3 |
19 |
- |
62015614 |
ZIM2 |
61977731 |
0.34 |
0.14 (75) |
|
|
|
||||||||
| ADAT3 |
19 |
+ |
1856416 |
SCAMP4 |
1856372 |
N/A |
N/A (0) |
|
|
|
||||||||
| FASTKD5 |
20 |
- |
3075164 |
UBOX5 |
3036218 |
-0.05 |
0.61 (105) |
Structure conserved in mouse |
|
|
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| RBM12 |
20 |
- |
33700290 |
CPNE1 |
33677379 |
0.47 |
0.06 (106) |
Structure conserved in mouse |
|
|
||||||||
| BAGE |
21 |
- |
10079666 |
BAGE4 |
10042712 |
N/A |
N/A |
|
|
|
||||||||
| C22orf29 |
22 |
- |
18213668 |
GNB1L |
18155937 |
0.06 |
0.45 (104) |
|
|
|
||||||||
| ZBED1 |
X |
- |
2414454 |
DHRSX |
2147546 |
0.42 |
0.09 (103) |
|
|
* chromosomal positions are based on NCBI human genome Build 36.3. ** refers to the number of experiments where both genes in that gene pair appeared together. | ||||||||
Yang et al. BMC Genomics 2008 9:456 doi:10.1186/1471-2164-9-456 |
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