Table 3 |
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|
Colinearity between the faba bean and M. truncatula genomes |
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|
FB LG |
No. of markers |
No. of non-orthologous markers |
No. of unassigned markers |
Current Mt genetic coverage (LG: cM, No. colinear markers)1,2 |
Current Mt pseudogenome coverage (bp)1 |
Current faba bean genetic coverage (cM)2 |
|
|
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|
FB-1 |
30 |
6 |
2 |
8: 0 – 68.2, 11 |
8: 736241 – 32433863 (90%) |
0 – 324.8 (100%) |
|
FB-2 |
27 |
4 |
2 |
1: 0 – 58.5, 9 7: 58.4 – 60, 3 |
1: 59849 – 26963044 (86%) 7: 25725918 – 26383168 (2%) |
152.6 – 313.1 (51.3%) 157.1 – 210.7 (25.4%) |
|
FB-3 |
18 |
1 |
3 |
4: 48.1 – 59, 11 |
4: 14544831 – 34128326 (50%) |
0 – 238.5 (100%) |
|
FB-4 |
13 |
2 |
0 |
5: 0 – 32, 6 2: 12.7 – 37.9, 3 |
5: 594897 – 17960204 (47%) 2: 8491236 – 15201671 (24%) |
0 – 142 (67%) 250.5 – 256.3 (1.9%) |
|
FB-5 |
12 |
1 |
1 |
3: 28 – 70.3, 9 |
3: 10888141 – 28213807 (46%) |
0 – 140.3 (92%) |
|
FB6 |
8 |
4 |
0 |
1: 2 – 2.2, NA |
1: 4942324 – 5151182 (0.7%) |
- |
|
FB-7 |
7 |
0 |
0 |
7: 22.6 – 52.8, 4 |
7: 9999559 – 22150020 (38%) |
0 – 58.9 (49%) |
|
FB-8 |
6 |
1 |
0 |
2: 48 – 57.8, 5 |
2: 17523205 – 20646361 (11%) |
0 – 49.9 (100%) |
|
FB-9 |
5 |
0 |
0 |
3: 62 – 72.5, 5 |
3: 19000000* – 30712150 (31%) |
0 – 64.1 (100%) |
|
FB-10 |
3 |
1 |
0 |
4: 0 – 7.4, NA |
4: 537530 – 3489843 (8%) |
- |
|
FB-11 |
3 |
3 |
0 |
NA |
NA |
- |
|
FB-12 |
3 |
0 |
0 |
4: 60.4 – 61.1, NA |
4: 36664007 – 38186081 (4%) |
- |
|
|
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|
NA: not applicable 1Data was either based on information from M. truncatula genome sequencing website [25] or from Choi et al. [12]. 2Data is provided for three or more colinear markers and excludes markers on the same chromosome rearranged relative to the order in M. truncatula. |
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|
Ellwood et al. BMC Genomics 2008 9:380 doi:10.1186/1471-2164-9-380 |
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