Table 6

Difference criterion sequences in indirect gene category

5-mer

Indirectly Affected

Difference

6-mer

Indirectly Affected

Difference


acctc

50%

48%

ctgaaa

42%

38%

aatct

58

42

taagga

42

38

ctaat

58

40

atataa

58

33

ctcac

50

37

aaacaa

50

32

cttat

50

37

aaacca

42

31

gatta

50

37

aataca

42

31

aacaa

67

36

tctttc

42

31

ataca

67

36

ataaat

50

30

aaagc

50

35

acacat

33

30

acaca

58

35

ctcacc

33

30


Sequences found to be most overrepresented in the upstream regions of genes hypothesized to be indirectly affected by berenil compared to unaffected genes. The percentage of affected genes and difference in percentage between affected and unaffected genes having each sequence is listed. Bolded sequences are shared with Table 7.

Eckdahl et al. BMC Genomics 2008 9:32   doi:10.1186/1471-2164-9-32

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