Table 6

Difference criterion sequences in indirect gene category
5-mer
 Indirectly Affected
 Difference
 6-mer
 Indirectly Affected
 Difference
acctc
 50%
 48%
 ctgaaa
 42%
 38%
aatct
 58
 42
 taagga
 42
 38
ctaat
 58
 40
 atataa
 58
 33
ctcac
 50
 37
 aaacaa
 50
 32
cttat
 50
 37
 aaacca
 42
 31
gatta
 50
 37
 aataca
 42
 31
aacaa
 67
 36
 tctttc
 42
 31
ataca
 67
 36
 ataaat
 50
 30
aaagc
 50
 35
 acacat
 33
 30
acaca
 58
 35
 ctcacc
 33
 30

Sequences found to be most overrepresented in the upstream regions of genes hypothesized to be indirectly affected by berenil compared to unaffected genes. The percentage of affected genes and difference in percentage between affected and unaffected genes having each sequence is listed. Bolded sequences are shared with Table 7.

Eckdahl et al. BMC Genomics 2008 9:32   doi:10.1186/1471-2164-9-32