Table 5

Ratio criterion sequences in direct gene category

5-mer

Directly Affected

Ratio

6-mer

Directly Affected

Ratio


ataag

30

2.3

tataag

15

2.6

aacaa

36

2.1

atataa

28

2.6

aataa

48

2.1

aatata

19

2.4

gtaaa

25

2.1

gaaata

12

2.4

taata

33

1.8

taataa

15

2.3

acata

25

1.8

tatata

35

2.2

agaat

24

1.8

aataat

14

2.2

atata

56

1.7

aaataa

22

2.1

tataa

42

1.7

ataata

16

2.0

tatat

48

1.5

aaaaga

20

2.0


Sequences ranked according to the number of occurrence in upstream regions of genes hypothesized to be directly affected compared to unaffected genes. The number of occurrences in affected genes and ratio of occurrences in affected genes to unaffected genes is listed for each sequence. Bolded sequences are shared with Table 4.

Eckdahl et al. BMC Genomics 2008 9:32   doi:10.1186/1471-2164-9-32

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