|
Difference criterion sequences in direct gene category |
|||||
| 5-mer |
Directly Affected |
Difference |
6-mer |
Directly Affected |
Difference |
|
|
|||||
| aataa |
71% |
31% |
tatata |
61% |
33% |
| ataag |
58 |
29 |
atataa |
58 |
32 |
| agaat |
50 |
25 |
aaaaga |
45 |
23 |
| aacaa |
55 |
24 |
aaataa |
45 |
21 |
| aaata |
74 |
23 |
aaaata |
37 |
20 |
| atata |
74 |
23 |
tataag |
34 |
20 |
| tataa |
74 |
23 |
taataa |
32 |
19 |
| cataa |
42 |
22 |
gaaata |
29 |
18 |
| gtaaa |
47 |
22 |
aaagaa |
47 |
16 |
| aaaga |
66 |
19 |
aataat |
29 |
16 |
|
Sequences found to be most overrepresented in the upstream regions of genes hypothesized to be directly affected by berenil compared to unaffected genes. The percentage of affected genes and difference in percentage between affected and unaffected genes having each sequence is listed. Bolded sequences are shared with Table 5. | |||||
Eckdahl et al. BMC Genomics 2008 9:32 doi:10.1186/1471-2164-9-32 |
|||||