Table 4

Difference criterion sequences in direct gene category

5-mer

Directly Affected

Difference

6-mer

Directly Affected

Difference


aataa

71%

31%

tatata

61%

33%

ataag

58

29

atataa

58

32

agaat

50

25

aaaaga

45

23

aacaa

55

24

aaataa

45

21

aaata

74

23

aaaata

37

20

atata

74

23

tataag

34

20

tataa

74

23

taataa

32

19

cataa

42

22

gaaata

29

18

gtaaa

47

22

aaagaa

47

16

aaaga

66

19

aataat

29

16


Sequences found to be most overrepresented in the upstream regions of genes hypothesized to be directly affected by berenil compared to unaffected genes. The percentage of affected genes and difference in percentage between affected and unaffected genes having each sequence is listed. Bolded sequences are shared with Table 5.

Eckdahl et al. BMC Genomics 2008 9:32   doi:10.1186/1471-2164-9-32

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