Table 8 |
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|
GO categories enriched among conserved and diverse genes of E. grandis. |
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|
βN extremea |
GO category |
Proportion out extreme |
Proportion in extreme |
p-value |
|
|
||||
|
"conserved" |
malate metabolic process |
0.0007 |
0.0093 |
0.0056 |
|
"conserved" |
ubiquitin-dependent protein catabolic process |
0.0131 |
0.0278 |
0.0314 |
|
"diverse" |
defense response |
0.0070 |
0.0302 |
0.0069 |
|
"diverse" |
biological_process_unknown |
0.1647 |
0.2362 |
0.0134 |
|
"diverse" |
response to biotic stimulus |
0.0032 |
0.0151 |
0.0480 |
|
|
||||
|
a The "conserved" tail is composed of contigs with βN smaller than 1.0 × 10-3, while the "diverse" tail has contigs with βN greater than 3.5 × 10-3. Biological process GO categories enriched (p-value < 0.05) in each of the two extremes of βN (non-synonymous nucleotide diversity) distribution. |
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|
Novaes et al. BMC Genomics 2008 9:312 doi:10.1186/1471-2164-9-312 |
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