Table 4

Polymorphisms detected among E. grandis cDNA sequences.

Variant type

Number of variants

Number of contigs containing SNPs


Indel

821

704

Involving two or more nucleotides

635

537

Total SNPs

28,652

9,942

Lower confidence SNPs (freq rare allele <10%)

4,910

1,089

Transition

4,239

1,005

Transversion

671

405

Higher confidence SNPs (freq rare allele ≥ 10%)

23,742

9,845

Transition

17,871

8,394

Transversion

5,871

3,881


TOTAL

30,108

10,223


Number of detected polymorphisms and affected contigs by variant type. The higher confidence SNPs were selected for further analysis

Novaes et al. BMC Genomics 2008 9:312   doi:10.1186/1471-2164-9-312

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