Open Access Highly Accessed Research article

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

Evandro Novaes1, Derek R Drost12, William G Farmerie34, Georgios J Pappas56, Dario Grattapaglia56, Ronald R Sederoff7 and Matias Kirst124*

  • * Corresponding author: Matias Kirst mkirst@ufl.edu

  • † Equal contributors

Author Affiliations

1 School of Forest Resources and Conservation, University of Florida, PO Box 110410, Gainesville, USA

2 Plant Molecular and Cellular Biology, University of Florida, Gainesville, USA

3 Interdisiplinary Center for Biotechnology Research, University of Florida, Gainesville, USA

4 University of Florida Genetics Institute, University of Florida, Gainesville, USA

5 Graduate Program in Genomic Sciences and Biotechnology, Universidade Católica de Brasília, Brasília, Brazil

6 EMBRAPA Recursos Genéticos e Biotecnologia, Empresa Brasileira de Pesquisa Agropecuária, Brasília, Brazil

7 Department of Genetics, North Carolina State University, Raleigh, USA

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BMC Genomics 2008, 9:312  doi:10.1186/1471-2164-9-312

Published: 30 June 2008

Additional files

Additional file 1:

Annotation and Ka/Ks estimates for 2,001 contigs. Annotation and SNP information for the 2,001 E. grandis contigs for which Ka/Ks was estimated.

Format: XLS Size: 1MB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 2:

Annotation and β estimates for 2,392 contigs. Annotation of 2,392 contigs for which β was estimated. Provided for each contig are the sequence length, number of non- and synonymous nucleotides sites, average sequencing depth (reads/nt), number of SNPs in non-coding (nc), non-synonymous (ns) and synonymous (s) sites.

Format: XLS Size: 1.4MB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data