Table 2 |
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|
Length and number of DNA fragments produced by cleavage of Alu repeats |
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|
Enzyme |
Fragment length* |
Positions* |
Number of sequences, thousands |
Total bp number in DNA fragment, millions bp |
Total bp number in selected DNA fragment(s), millions bp |
|
|
|||||
|
AluI |
92 ± 2 |
136–228 |
9,9 |
0,9 |
|
|
80 ± 2 |
136–216 |
2,3 |
0,2 |
||
|
60 ± 2 |
168–228 |
151,8 |
9,1 |
9,1 |
|
|
48 ± 2 |
168–216 |
98,7 |
4,8 |
4,8 |
|
|
32 ± 2 |
136–168 |
221,8 |
7,1 |
7,1 |
|
|
12 ± 2 |
216–228 |
20,3 |
0,2 |
||
|
|
|||||
|
AsuHPI |
198 ± 3 |
61–259 |
13,6 |
2,7 |
|
|
159 ± 3 |
100–259 |
86,8 |
13,7 |
13,7 |
|
|
39 ± 2 |
61–100 |
97,0 |
3,9 |
||
|
|
|||||
|
Bpu10I |
135 ± 3 |
46–181 |
107,7 |
14,5 |
14,5 |
|
|
|||||
|
Bst2UI |
252 ± 4 |
3–255 |
10,4 |
2,6 |
|
|
202 ± 4 |
3–205 |
18,1 |
3,7 |
||
|
184 ± 3 |
71–255 |
4,4 |
0,8 |
||
|
167 ± 3 |
88–255 |
102,0 |
17,0 |
17,0 |
|
|
135 ± 3 134 ± 3 |
3–138 71–205 |
15,5 10,3 |
2,1 1,4 |
||
|
117 ± 3 117 ± 3 |
88–205 138–255 |
172,2 66,8 |
20,1 7,8 |
27,9 |
|
|
85 ± 2 |
3–88 |
123,7 |
10,5 |
10,5 |
|
|
68 ± 2 |
3–71 |
41,0 |
2,8 |
||
|
67 ± 2 |
138–205 |
125,1 |
8,4 |
11,8 |
|
|
67 ± 2 |
71–138 |
9,3 |
0,6 |
||
|
50 ± 2 |
88–138 |
139,5 |
6,9 |
22,9 |
|
|
50 ± 2 |
205–255 |
323,7 |
16,0 |
||
|
17 ± 2 |
71–88 |
110,0 |
2,0 |
||
|
|
|||||
|
BssECI |
208 ± 4 |
47–255 |
47,8 |
9,9 |
9,9 |
|
166 ± 3 |
89–255 |
15,8 |
2,6 |
||
|
158 ± 3 |
47–205 |
217,6 |
34,3 |
34,3 |
|
|
116 ± 3 |
89–205 |
53,5 |
6,2 |
6,2 |
|
|
50 ± 2 |
205–255 |
405,6 |
20,3 |
20,3 |
|
|
42 ± 2 |
47–89 |
41,5 |
1,7 |
||
|
|
|||||
|
BstDEI |
183 ± 3 |
47–230 |
2,3 |
0,4 |
|
|
165 ± 3 |
65–230 |
4,7 |
0,8 |
||
|
135 ± 3 |
47–182 |
68,1 |
9,2 |
9,2 |
|
|
126 ± 3 |
47–173 |
34,6 |
4,3 |
||
|
117 ± 3 |
65–182 |
114,1 |
13,3 |
13,3 |
|
|
108 ± 3 |
65–173 |
53,8 |
5,8 |
5,8 |
|
|
57 ± 2 |
173–230 |
6,7 |
0,4 |
||
|
48 ± 2 |
182–230 |
133,7 |
6,4 |
6,4 |
|
|
18 ± 2 |
47–65 |
65,4 |
1,2 |
||
|
|
|||||
|
BstMAI |
198 ± 3 |
80–278 |
38,6 |
7,6 |
7,6 |
|
190 ± 3 |
80–270 |
58,7 |
11,1 |
11,1 |
|
|
167 ± 3 |
111–278 |
78,9 |
13,1 |
13,1 |
|
|
159 ± 3 |
111–270 |
125,4 |
19,9 |
19,9 |
|
|
31 ± 2 |
80–111 |
235,0 |
7,3 |
7,3 |
|
|
8 ± 1 |
270–278 |
167,6 |
1,3 |
||
|
|
|||||
|
HinfI |
79 ± 2 |
193–272 |
144,4 |
11,4 |
11,4 |
|
|
|||||
|
Data for DNA fragments with total bp numbers exceeding 4.5 mln bp are shown in bold. * If there are two positions of the site, an average value is indicated (for example, 99/101 positions for AsuHPI site are replaced with 100). |
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|
Abdurashitov et al. BMC Genomics 2008 9:305 doi:10.1186/1471-2164-9-305 |
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