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Developmental, function and pathway analyses of 125 cotton fiber genes (Set 1) identified by expression profiling and double feature selection analysis highlighting the top represented GO pathways. |
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| Cluster (genes) |
Pima pattern |
TM1 pattern |
Top pathway (P value) |
Top GO (P value) |
|
|
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| 1 (13) |
Slightly up in SCW |
Highly up in SCW |
Reductive carboxylase cycle (0.013) |
Response to biotic stimulus (0.02) |
| 2 (34) |
Down in SCW |
Slightly up in the overlapped transition from PCW to SCW |
Stilbene, cumarine and lignin biosynthesis (0) |
Purine nucleotide binding (0.025) |
| 3 (43) |
Up in both PCW and SCW |
Down in both PCW and SCW |
Starch and Sucrose metabolism (0.03) |
Sucrose metabolism (0.02) |
| 4 (28) |
Up in PCW and down in SCW |
Up in both PCW and SCW |
VEGF signaling pathway (0.02) |
Serine-type peptidase activity (0.0003) |
| 5 (7) |
Down in the transition from PCW to SCW and up in SCW |
Up in the PCW and down in the transition from PCW to SCW |
Phenylalanine metabolism (0.004) |
Transferase activity (0.01) |
Alabady et al. BMC Genomics 2008 9:295 doi:10.1186/1471-2164-9-295 |
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