Table 3

Longest NumtS of Reference Human NumtS compilation (RHNumtS)

NumtS Code

Chr

Strand

Mt Start

Mt End

Mt fragment length

Nuc Start

Nuc End

Chr fragment length

Difference

Quality Score


1

1

+

3914

9755

5842

554327

560167

5840

3

4

3

1

-

6060

9316

3257

107146786

107150029

3243

15

1.25

4

1

-

1051

3162

2112

120286496

120288780

2284

173

0.75

9

1

-

9782

13593

3812

233768514

233772288

3774

39

1.75

10

1

-

636

6189

5554

236170699

236176250

5551

4

1.75

11

1

-

12218

16563

4346

236177249

236181582

4333

14

1.75

14

2

+

12220

16475

4256

82896241

82900506

4265

10

1.75

19

2

+

596

5892

5297

117495259

117500547

5288

10

3.25

20

2

+

9196

13574

4379

120685762

120690928

5166

788

1.75

22

2

+

3799

15354

11556

130745853

130757329

11476

81

2

23

2

-

10657

15398

4742

131843104

131847799

4695

48

1.75

24

2

-

3799

10519

6721

131853669

131860205

6536

186

1.5

25

2

-

598

5892

5295

140691291

140698242

6951

1657

3.5

27

2

-

9166

16563

7398

143566386

143574013

7627

230

1.75

30

2

+

11801

15067

3267

155875844

155879111

3267

1

2

33

2

-

10440

13131

2692

201785264

201787949

2685

8

2

34

2

+

6966

11240

4275

203187200

203191742

4542

268

2

36

2

-

596

3105

2510

212346765

212349578

2813

304

1.75

37

2

+

4854

7590

2737

212350179

212352885

2706

32

1.5

58

3

-

6604

9316

2713

89718693

89721366

2673

41

2

61

3

-

9787

12340

2554

108095676

108098627

2951

398

1.25

62

3

+

13536

15573

2038

108100533

108101514

981

1058

1.5

71

4

-

9781

12301

2521

25328634

25331437

2803

283

1.75

76

4

-

9485

16561

7077

65155336

65160181

4845

2233

1.75

79

4

+

596

3105

2510

117438367

117440855

2488

23

1.75

81

4

-

672

15325

14654

156592474

156607061

14587

68

3.5

88

5

-

341

2697

2357

79981597

79983943

2346

12

4.75

89

5

+

12662

16124

3463

93928917

93932379

3462

2

5

91

5

-

6117

15183

9067

99409541

99418648

9107

41

4.5

94

5

-

10270

15488

5219

134286898

134292116

5218

2

5

97

6

+

8437

10622

2186

92493159

92493750

591

1596

1.5

100

6

+

7451

11649

4199

154028400

154032608

4208

10

1.75

102

7

+

8505

15238

6734

57238827

57245471

6644

91

3.75

103

7

+

3819

15924

12106

57257414

57269467

12053

54

6

104

7

-

3117

11880

8764

63201998

63210482

8484

281

1.5

105

7

-

5513

8246

2734

68433640

68436926

3286

553

1.75

106

7

+

13065

15369

2305

111799937

111802234

2297

9

2

107

7

-

2793

6553

3761

141147677

141151744

4067

307

2

108

7

+

600

3095

2496

142052596

142055088

2492

5

2.25

110

8

+

636

4888

4253

32988565

32992739

4174

80

1.5

113

8

-

656

4880

4225

47858273

47861837

3564

662

4

114

8

-

9176

16569

7394

68655653

68662552

6899

496

1.75

117

8

+

1013

7114

6102

104164459

104171823

7364

1263

3.5

120

9

+

1294

13574

12281

5082095

5100699

18604

6324

1.5

121

9

+

598

3093

2496

33646633

33649128

2495

2

1.5

125

9

-

4773

6873

2101

82368550

82370501

1951

151

1.75

126

9

+

9202

11598

2397

93911111

93913772

2661

265

3.25

128

10

+

2417

4831

2415

20075681

20077114

1433

983

2.25

131

10

+

636

3105

2470

57027643

57030440

2797

328

1.5

132

10

-

3821

7698

3878

71020912

71025687

4775

898

1.75

134

11

-

577

2972

2396

10486010

10488403

2393

4

6

140

11

+

9820

15243

5424

80940264

80945683

5419

6

1.75

142

11

-

724

9666

8943

102778067

102786933

8866

78

3.25

150

13

+

13052

16472

3421

95142796

95146598

3802

382

1.5

156

14

+

11367

15325

3959

83708940

83713093

4153

195

1.75

158

15

+

9786

15318

5533

56229853

56235023

5170

364

1.5

159

16

-

2468

7683

5216

3357487

3362068

4581

636

3.5

160

16

-

8688

15327

6640

10720543

10726494

5951

690

1.5

164

17

-

596

5979

5384

19442485

19449425

6940

1557

3.5

165

17

+

14365

16569

2205

21942648

21944853

2205

1

3.75

166

17

+

1

11112

11112

21944854

21955968

11114

3

3.5

171

20

-

649

4038

3390

55366111

55369449

3338

53

3.5

174

X

-

581

5892

5312

55221910

55227180

5270

43

4

175

X

+

1049

3161

2113

61976282

61978565

2283

171

1.75

182

X

+

1054

4415

3362

142345841

142349570

3729

368

1.75

184

Y

+

596

4477

3882

8294669

8300289

5620

1739

1.25


Each NumtS was assigned an identifying numeric code, according to increasing values starting from chromosome 1; a letter code (A, B, or C) was assigned to only 3 NumtS, because they were located later, when all other NumtS had already been characterised. Chromosome and strand location is listed for each NumtS; both mt and nuclear coordinates of NumtS ("mt start" and "mt end", "chr start" and "chr end"); mitochondrial and nuclear fragment lengths; "difference" between mitochondrial and nuclear fragment lengths; and RHNumtS quality score are also reported. Additional file 1 reports the complete RHNumtS compilation: there, NumtS exclusively identified by Blastn are shown in grey and NumtS exclusively identified by Blastn, but only on Human Genome Celera Assembly, shown in black in columns "Nuc start" and "Nuc end"; repeated NumtS in bold type and underlined in columns "Mt start" and "Mt end". NumtS with scores higher than 3 are shown in grey in column "score".

Lascaro et al. BMC Genomics 2008 9:267   doi:10.1186/1471-2164-9-267

Open Data