Additional file 2.

Comparison of BLAT and Megablast results. For each NumtS in the RHNumtS compilation, Megablast and BLAT programs either did or did not detect it (yes/no); if yes, table shows mt coordinates, BLAT code assigned, number of aligned blocks and fragments as reported in BLAT details, and %identity value as reported in BLAT output. NumtS reporting code "Yes_1" in "BLAT hits correspondence table" were recovered by submitting mt fragment corresponding to a NumtS obtained through Blastn to BLAT, and not through submission of entire mt genome (J01415.2 or NC_01807.4) to BLAT.

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Lascaro et al. BMC Genomics 2008 9:267   doi:10.1186/1471-2164-9-267