Table 3

Presence of Single Nucleotide Polymorphisms in protein coding genes between H. akashiwo CCMP452 and NIES293

Gene

Synonymous

Non-synonymous


Ribosomal


rpl12

-

1

rpl19

-

1

rps12

1

-

rps14

-

1

rps31

-

1

Translational


rpoB

-

2

rpoC2

2

1

Photosystem/energy


psaA

2

-

psaD

1

-

psaE

-

1

psbB

1

-

ycf04A

1

-

atpA

-

1

atpI

1

-

petD

1

-

Metabolic


clpC

1

-

ftsH

1

-

ilvB

1

-

secA

1

1

secY

1

-

rbcL* (×2)

2

2

tsg1

1

-

ycf24B

1

-

ycf/orf


ycf36

1

-

ycf39

-

1

ycf46

-

1

ycf66

1

-

orf006* (×2)

4

-

orf021

1

1

orf026

2

5

orf041

-

5

Highly impacted genes

XerCC

2

10

orf014D

-

1


* located on the inverted repeat

A photosystem 1 assembly protein

B ABC transporter protein

C within the first 275 AAs

D within the first 65 AAs

Cattolico et al. BMC Genomics 2008 9:211   doi:10.1186/1471-2164-9-211

Open Data