|
TAL effector genes in PXO99A |
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| Gene |
ID |
Coordinates |
Strand |
Repeats |
Comments1 |
|
|
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| pthXo7 (tal1) |
03922 |
559109..562222 |
- |
21.5 |
OsTFIIAγ1 |
| pthXo1 (tal2b) |
00227 |
1645240..1649043 |
- |
23.5 |
Os8N3 |
| tal2a |
00223 |
1650351..1653557 |
- |
14.5 |
|
| tal3a |
00511 |
1860212..1862083 |
+ |
17.5 |
N-term deletion, truncated |
| tal3b |
00505 |
1864934..1866895 |
+ |
17.5 |
N-term deletion, truncated |
| tal4 |
00318 |
2083533..2085968 |
- |
15.5 |
|
| pthXo6, (tal5b) |
00572 |
2354996..2358139 |
- |
22.5 |
OsTFX1 |
| tal5a |
00567 |
2360008..2362440 |
- |
15.5 |
|
| tal6a |
00546 |
2384284..2387193 |
+ |
19.5 |
|
| tal6b |
05609 |
2388988..2392041 |
+ |
20.5 |
N-term frameshift |
| tal7a |
05633 |
2683629..2686343 |
+ |
17.5 |
|
| tal7b |
01085 |
2688137..2691088 |
+ |
19.5 |
|
| tal8a |
06229 |
2895716..2898430 |
+ |
17.5 |
Duplicate of tal7a |
| tal8b |
06234 |
2900224..2903175 |
+ |
19.5 |
Duplicate of tal7b |
| tal9a |
02172 |
4101543..4104803 |
+ |
19.5 |
|
| tal9b |
05714 |
4106597..4110244 |
+ |
26.5 |
|
| avrXa27, (tal9c) |
05718 |
4112038..4114644 |
+ |
16.5 |
Xa27 |
| tal9d |
02269 |
4116438..4118642 |
+ |
12.5 |
|
| tal9e |
02272 |
4120436..4123759 |
+ |
23.5 |
|
|
1The rice gene induced by the effector is in italics. | |||||
Salzberg et al. BMC Genomics 2008 9:204 doi:10.1186/1471-2164-9-204 |
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