Table 2

TAL effector genes in PXO99A

Gene

ID

Coordinates

Strand

Repeats

Comments1


pthXo7 (tal1)

03922

559109..562222

-

21.5

OsTFIIA╬│1

pthXo1 (tal2b)

00227

1645240..1649043

-

23.5

Os8N3

tal2a

00223

1650351..1653557

-

14.5

tal3a

00511

1860212..1862083

+

17.5

N-term deletion, truncated

tal3b

00505

1864934..1866895

+

17.5

N-term deletion, truncated

tal4

00318

2083533..2085968

-

15.5

pthXo6, (tal5b)

00572

2354996..2358139

-

22.5

OsTFX1

tal5a

00567

2360008..2362440

-

15.5

tal6a

00546

2384284..2387193

+

19.5

tal6b

05609

2388988..2392041

+

20.5

N-term frameshift

tal7a

05633

2683629..2686343

+

17.5

tal7b

01085

2688137..2691088

+

19.5

tal8a

06229

2895716..2898430

+

17.5

Duplicate of tal7a

tal8b

06234

2900224..2903175

+

19.5

Duplicate of tal7b

tal9a

02172

4101543..4104803

+

19.5

tal9b

05714

4106597..4110244

+

26.5

avrXa27, (tal9c)

05718

4112038..4114644

+

16.5

Xa27

tal9d

02269

4116438..4118642

+

12.5

tal9e

02272

4120436..4123759

+

23.5


1The rice gene induced by the effector is in italics.

Salzberg et al. BMC Genomics 2008 9:204   doi:10.1186/1471-2164-9-204

Open Data