Research article
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A
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* Corresponding author: Steven L Salzberg salzberg@umd.edu
1 Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD 20742, USA
2 The Institute for Genomic Research, Rockville, MD 20850, USA
3 Institute for Genome Sciences, University of Maryland, Baltimore, MD 21201, USA
4 Laboratory of Plant Pathology, Kyoto Prefectural University, Sakyo, Kyoto 606-8522, Japan
5 Department of Genetic Resources, National Institute of Agrobiological Sciences, Kannondai, Tsukuba 305-8602, Japan
6 Current address: J. Craig Venter Institute, Rockville, MD 20850, USA
7 Current address: National Center for Biotechnology Information, National Institutes of Health, Bethesda, MD 20894, USA
8 Centre for Cellular and Molecular Biology, Council of Scientific and Industrial Research, Hyderabad, India
9 Institute of Himalayan Bioresource Technology, Council of Scientific and Industrial Research, Palampur, India
10 Department of Bioagricultural Sciences and Pest Management, Colorado State University, Fort Collins, CO, USA
11 Department of Plant Pathology, Iowa State University, Ames, IA, USA
12 Institut de la Recherche pour le Developpement, 911 Av. Agropolis, Montpellier, 34090, France
13 BIOMERIT Research Centre, BioSciences Institute, University College Cork, Cork, Ireland
14 Graduate School of Natural Science & Technology, Shizuoka University, 836 Ohya, Suruga-ku, Shizuoka, 422-8017, Japan
15 Department of Plant Pathology, UC Davis, Davis, CA 95616, USA
16 Departamento de Botânica, IB-USP, Sao Paulo, SP, Brazil
17 Department of Plant Pathology, Kansas State University, Manhattan, KS, USA
BMC Genomics 2008, 9:204 doi:10.1186/1471-2164-9-204
Published: 1 May 2008Additional files
Additional file 1:
Supplementary Figure 1. Phylogenetic relationships among X. oryzae pv. oryzae (Xoo) strains PXO99A, KACC10331, and MAFF311018, and X. oryzae pv. oryzicola (Xoc) strain BLS256 based on whole genome alignment.
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Additional file 2:
Supplementary Tables. Supplementary Table 1, Genes unique to PXO99A and unique to MAFF311018; Supplementary Table 2, Primers used to amplify genes at the non-fimbrial adhesin encoding locus; Supplementary Table 3, Primers used to confirm the 212 kb direct repeat.
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