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Top 10 structures from the "highly conserved set" based on structure conservation. |
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| Group ID1 (CoV2) |
Structure3 |
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| GO Entries4 |
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| 3(HSL3) (28.13) |
NM_005321:721-785 NM_021062:401–431 NM_005319:704–732 NM_003526:412–438 NM_002105:545–578 NM_003516:510–534 #=GC SS_cons |
AACC-C-AAAGGCTCTTTTCAGAGCCACCCA AACC-C-AAAGGCTCTTTTCAGAGCCACCTA AACC-CAAAAGGCTCTTTTCAGAGCCACC-A --CC-C-AAAGGCTCTTTTAAGAGCCACCCA A-CCAC-AAAGGCCCTTTTAAGGGCCACC-A -A-----AAAGGCTCTTTTCAGAGCCACCCA ..........((((((....))))))..... |
HIST1H1E: histone cluster 1, H1e HIST1H2BB: histone cluster 1, H2bb HIST1H1C: histone cluster 1, H1c HIST1H2BC: histone cluster 1, H2bc H2AFX: H2A histone family, member X HIST2H2AA3: histone cluster 2, H2aa3 |
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| GO:0006334 (0) nucleosome assembly GO:0007001 (0) chromosome organization and biogenesis (sensu Eukarya). |
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| 9(IRE) (19.93) |
NM_003234:3430–3460 NM_014585:197–237 NM_003234:3884–3912 NM_003234:3481–3509 NM_000032:13–36 NM_000146:20–40 #=GC SS_cons |
TTTATCAGTGACAGAGTTCACTATAAA AACTTCAGCTACAGTGTTAGCTAAGTT ATTATCGGGAGCAGTGTCTTCCATAAT ATTATCGGAAGCAGTGCCTTCCATAAT GT--TCGTCCTCAGTGCAGGGCA--AC TG---CTTCAACAGTGTTTGGA---CG (((((.(((((......)))))))))) |
TFRC: transferrin receptor (p90, CD71) SLC40A1: solute carrier family 40 (iron-regulated... TFRC: transferrin receptor (p90, CD71) TFRC: transferrin receptor (p90, CD71) ALAS2: aminolevulinate, delta-, synthase 2 (side... FTL: ferritin, light polypeptide |
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| GO:0006826 (0) iron ion transport GO:0006879 (0) iron ion homeostasis |
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| 15 (17.40) |
NM_015556:203–223 NM_018947:5349–5370 NM_000617:2349–2372 NM_018970:469–543 NM_173494:843–866 #=GC SS_cons |
TCATTTAACCTTTTAAATGA AAATTTAACATTTTAAATTT TAATTTCTCAGTGGAAGTTA TATATTTTCAGTAAAATGTA TATTGTGACCATTTACAGTA ((((((((....)))))))) |
SIPA1L1: signal-induced proliferation-associated 1 like... CYCS: cytochrome c, somatic, nuclear gene encoding SLC11A2: solute carrier family 11 (proton-coupled dival... GPR85: G protein-coupled receptor 85 CXorf41: chromosome X open reading frame 41 |
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| GO:0006810 (0.012265) transport |
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| 17 (17.33) |
NM_004441:3717–3813 NM_004443:3616–3640 NM_005398:2077–2107 NM_032827:2394–2416 #=GC SS_cons |
TCTTCATATTGAAGA TCTTCATATTGAAGA CCTTCATATTGAAGG GCTTCAAATTGAAGT (((((.....))))) |
EPHB1: EPH receptor B1 EPHB3: EPH receptor B3 PPP1R3C: protein phosphatase 1, regulatory (inhibitor) subu... ATOH8: atonal homolog 8 (Drosophila) |
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| GO:0007169 (0.00033) transmembrane receptor protein tyrosine kinase signaling pathway GO:0007165 (0.031793) signal transduction GO:0006468 (0.00927) protein amino acid phosphorylation |
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| 19 (17.17) |
NM_000314:502–530 NM_032564:144–170 NM_014751:110–164 NM_016233:2056–2074 #=GC SS_cons |
CCTCCCGCTCCTGGAGCGGGGGG GCCCTGGCCCCGGGGGCCGGGGC -CGCTGGC-CCCGG-GTCAGCG- -CCTGTCC-CCCTG-GGGCGGG- ((((((((((...)))))))))) |
PTEN: phosphatase and tensin homolog (mutated in multi... DGAT2: diacylglycerol O-acyltransferase homolog 2 (mou... MTSS1: metastasis suppressor 1 PADI3: peptidyl arginine deiminase, type III |
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| GO:0045786 (0.00108) negative regulation of cell cycle GO:0007049 (0.009836) cell cycle GO:0006629 (0.001806) lipid metabolism |
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| 21 (17.00) |
NM_000899:1060–1087 NM_015355:3606–3643 NM_003081:1331–1430 NM_002893:1613–1645 #=GC SS_cons |
TTGCTTCATAAATGAAGCAG ATTCTTTATTTATAAAGGAT -TTATGCATTTATGCATGA- --GCTTGATTTATCAAGC-- ((((((((....)))))))) |
KITLG: KIT ligand SUZ12: suppressor of zeste 12 homolog (Drosophila) SNAP25: synaptosomal-associated protein, 25 kDa RBBP7: retinoblastoma binding protein 7 |
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| GO:0016568 (0.000785) chromatin modification GO:0008283 (0.002712) cell proliferation |
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| 23 (16.90) |
NM_001546:1287–1309 NM_020834:2941–2962 NM_005643:1316–1339 NM_017617:8938–8965 NM_016120:2737–2778 #=GC SS_cons |
CATCTATTGTTTAAAATAGATG CAGGTTTGGTTTTACAAACCTG CTTTAATGGTTTCACATTGAAG G-GATTTTGTTTAAAAAATC-T C--ATTT-GTTTAA-AAAT--G ((((((((......)))))))) |
ID4: inhibitor of DNA binding 4, dominant negative ... KIAA1443: KIAA1443 TAF11: TAF11 RNA polymerase II, TATA box binding pr... NOTCH1: Notch homolog 1, translocation-associated (... RNF12: ring finger protein 12 |
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| GO:0016568 (0.000785) chromatin modification GO:0008283 (0.002712) cell proliferation |
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| 25 (16.80) |
NM_004625:1678–1700 NM_015508:3801–3828 NM_031371:4664–4722 NM_016513:2522–2555 NM_004744:2276–2294 NM_138290:1864–1884 #=GC SS_cons |
ATATTAATTTATTTAATTAAA ATATTTATTTTTTTAATAAAA ATATTAAAGATTCTCTTTAAA ---TTAAAGTTTTTTTTTAA- ---TTAATTTTTCAAATTAA- ---GTAAATGTTTAATTTAC- ...((((((.....)))))). |
WNT7A: wingless-type MMTV integration site family, me... TIPARP: TCDD-inducible poly(ADP-ribose) polymerase ARID4B: AT rich interactive domain 4B (RBP1-like), tr... ICK: intestinal cell (MAK-like) kinase, transcript va... LRAT: lecithin retinol acyltransferase (phosphatidylc... RPIB9: Rap2-binding protein 9 |
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| GO:0007275 (0.036763) development |
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| 27 (16.57) |
NM_000252:3053–3080 NM_003582:2041–2075 NM_001635:2828–2849 NM_001338:2060–2081 NM_152267:3108–3127 NM_006329:2418–2435 NM_005627:1871–1929 NM_000170:3730–3747 #=GC SS_cons |
TTTTACAATGATTTGTAAAG TTTTTATATGATTATAAAAG GTTTTGCCTAATGGCAAAAC ATTTTTCTTATTAGAAAAAT ATTTTCACTGTTGTGAAAGT -TTTTGAGTATTTTTAAAA- -TCTTCCATATTTGGAAGA- -TTATTAGTATTCTAATAA- ((((((((....)))))))) |
MTM1: myotubular myopathy 1 DYRK3: dual-specificity tyrosine-(Y)-phosphorylation r... AMPH: amphiphysin (Stiff-Man syndrome with breast canc... CXADR: coxsackie virus and adenovirus receptor FLJ38628: hypothetical protein FLJ38628 FBLN5: fibulin 5 SGK: serum/glucocorticoid regulated kinase GLDC: glycine dehydrogenase (decarboxylating; glycine ... |
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| GO:0007155 (0.027609) cell adhesion |
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| 29 (16.30) |
NM_002025:8958–8980 NM_014506:1434–1458 NM_014417:1285–1350 NM_007011:2104–2126 NM_004215:1327–1350 #=GC SS_cons |
GCTGATGCTTTCAGC GCTGTTCTTTGCAGC -CTCCTCCTGGGAG- -CTCTTCCTGGGAG- -CTAGTGTTTCTAG- (((((.....))))) |
AFF2: AF4/FMR2 family, member 2 TOR1B: torsin family 1, member B (torsin B) BBC3: BCL2 binding component 3 ABHD2: abhydrolase domain containing 2 EBAG9: estrogen receptor binding site associated, antigen, 9... |
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| GO:0006915 (0.011186) apoptosis |
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1 Group ID is a serial number, which can be used to query the GLEAN-UTR database. 2CoV, cohesive value, which reflects the conservation of structure. 3Structures are aligned, and a consensus structure is shown for each group. For each structure, its location in RefSeq sequence is indicated, and its gene symbol and name are also listed. 4Significant GO terms associated with each structure group are shown and p-values from hypergeometric tests are indicated in parenthesis. | |||
Khaladkar et al. BMC Genomics 2008 9:189 doi:10.1186/1471-2164-9-189 |
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