Email updates

Keep up to date with the latest news and content from BMC Genomics and BioMed Central.

Open Access Research article

Prediction and analysis of nucleosome exclusion regions in the human genome

Ahmed Radwan1, Akmal Younis1, Peter Luykx2 and Sawsan Khuri3*

Author Affiliations

1 Department of Electrical and Computer Engineering, University of Miami College of Engineering, Coral Gables, FL 33124, USA

2 Department of Biology, University of Miami, Coral Gables, FL 33124, USA

3 Center for Computational Science, and the Dr. John T. Macdonald Foundation Department of Human Genetics and Genomic Medicine, University of Miami Miller School of Medicine, Miami, FL 33136 USA

For all author emails, please log on.

BMC Genomics 2008, 9:186  doi:10.1186/1471-2164-9-186

Published: 22 April 2008

Additional files

Additional file 1:

NXScore profiles for all 23 chromosomes and the mitochondrial chromosome.

Format: PDF Size: 309KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 2:

Graphs of additional groupings for Figure 3.

Format: PDF Size: 172KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 3:

Graphs of additional genes for Figure 6.

Format: PDF Size: 144KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 4:

Genes used and their tissue specificity. An SQL file containing the 19055 genes used in this study and their tissue specificity level according to Shannon's entropy.

Format: SQL Size: 626KB Download file

Open Data

Additional file 5:

Nucleosome exclusion regions in GFF format. A zip file containing the whole annotations for human genome nucleosome exclusion regions in gff format, a single *.gff file for each chromosome.

Format: ZIP Size: 12.1MB Download file

Open Data

Additional file 6:

Nucleosome exclusion scores in wiggle format. A zip file containing the whole annotations for human genome nucleosome exclusion scores in wiggle format, a single *.wig file for each chromosome.

Format: ZIP Size: 14.2MB Download file

Open Data