|
Relative abundance of differentially expressed microRNAs |
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| microRNA name |
Length |
Sequence |
# Reads in MDV infected CEF |
# Reads in uninfected CEF |
Ratio Infected/Uninfected (Normalized) |
|
|
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| gga-miR-29b |
23 |
TAGCACCATTTGAAATCAGTGTT |
64 |
2 |
18.8 |
| gga-miR-196 |
21 |
TAGGTAGTTTCATGTTGTTGG |
23 |
1 |
13.5 |
| gga-miR-133a |
22 |
TTGGTCCCCTTCAACCAGCTGT |
15 |
2 |
4.4 |
| gga-miR-10b |
22 |
TACCCTGTAGAACCGAATTTGT |
70 |
15 |
2.7 |
| gga-miR-30d |
22 |
TGTAAACATCCCCGACTGGAAG |
23 |
6 |
2.3 |
| gga-let-7f |
22 |
TGAGGTAGTAGATTGTATAGTT |
338 |
454 |
0.4 |
| gga-let-7b |
22 |
TGAGGTAGTAGGTTGTGTGGTT |
74 |
105 |
0.4 |
| gga-miR-130a |
22 |
CAGTGCAATATTAAAAGGGCAT |
18 |
28 |
0.4 |
| gga-let-7a |
22 |
TGAGGTAGTAGGTTGTATAGTT |
383 |
603 |
0.4 |
| gga-miR-1a |
21 |
TGGAATGTAAAGAAGTATGTA |
7 |
12 |
0.3 |
|
Data shown are microRNAs with more than 15 reads in one library and 2-fold difference in read count, after scaling for total number of reads matching the chicken genome in each library. | |||||
Burnside et al. BMC Genomics 2008 9:185 doi:10.1186/1471-2164-9-185 |
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