|
Heat shock upregulated genes. |
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| Probeset ID |
Potato best match and annotation |
Avg. signal 17°C |
Avg. signal 4°C |
Fold change |
Adj. P.Val. |
|
|
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| Les.269.1.S1_at |
TA34173_411 Small heat shock protein, chloroplast precursor (Tomato) |
94.31 |
4072.03 |
42.94 |
0.00129 |
| LesAffx.10596.1.S1_at |
BG888211 Chloroplast small heat shock protein class I (Capsicum frutescens) |
64.18 |
2561.36 |
39.78 |
0.00129 |
| Les.4004.1.S1_a_at |
TA25739_4113 Hsp19.9 protein (Lycopersicon peruvianum) |
149.19 |
5743.57 |
38.50 |
0.00140 |
| Les.4819.1.S1_at |
TA24545_4113 DnaK protein, putative (Oryza sativa) |
44.76 |
1295.63 |
29.84 |
0.00254 |
| Les.3677.1.S1_at |
TA35283_4113 Small heat-shock protein (Tomato) |
16.02 |
396.81 |
25.04 |
0.00182 |
| Les.4150.1.S1_at |
TA29480_4113 Mitochondrial small heat-shock protein (Tomato) |
173.18 |
1515.29 |
8.75 |
0.00287 |
| Les.3160.3.S1_at |
TA24543_4113 DnaK protein, putative (Oryza sativa – japonica cultivar-group) |
173.64 |
1294.13 |
7.39 |
0.00325 |
| Les.3739.1.S1_at |
TA42758_4113 Small heat-shock protein homolog protein (Solanum tuberosum) |
4.30 |
20.16 |
4.18 |
0.04704 |
|
Signals are the averages of two biological replicates (avg. signal) for both control (17°C) and cold stress (4 days at 4°C) and fold changes represent the ratios of stress to control average signals. For a given probeset, potato best match refers to the best hit (highest perfect alignment score) between tomato target vs. potato TIGR TA entry as determined by the Global Match File. Adjusted P-value (Adj.P.Val) estimates false positives and refers to Benjamini-Hochberg's multiple test correction of the false discovery rate. | |||||
Bagnaresi et al. BMC Genomics 2008 9:176 doi:10.1186/1471-2164-9-176 |
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