|
sRNAs transcripts observed in P. aeruginosa PAO1 |
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| Intergenic region a |
Coordinates in PAO1 genome (bp) |
5' gene |
3' gene |
sRNA |
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|
|
|
|
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| Length (bp) |
Dir.b |
Length (bp) |
Dir.b |
Predicted length (nt)c |
Observed length (nt)d |
Dir.g |
||
|
|
||||||||
| 491 |
912780–913085 |
1185 |
< |
486 |
> |
90 |
100, 200 |
> |
| 622 |
1140860–1141267 |
1146 |
> |
465 |
> |
200, 300 |
? |
|
| 645 |
1204782–1205770 |
1149 |
> |
1767 |
> |
300 ± 10 |
300 |
< |
| 888 = ffs |
1668833–1669085 |
378 |
> |
867 |
< |
113 |
90 |
> |
| 1059 |
1996807–1997508 |
1659 |
< |
1041 |
< |
150, 200, 300 |
? |
|
| 1466 |
2918212–2918965 |
1041 |
> |
534 |
< |
300 |
? |
|
| 1559 |
3112151–3112876 |
519 |
> |
900 |
> |
250, 300e |
? |
|
| 1698 = rgsA |
3318657–3318881 |
1134 |
> |
777 |
< |
120 ± 10 |
100, 300 |
> |
| 1714 |
3360654–3360873 |
1386 |
< |
3474 |
> |
200 |
? |
|
| 1887 |
3705161–3705888 |
1995 |
< |
603 |
< |
210 ± 10 |
200 |
< |
| 2315 |
4536493–4536919 |
660 |
< |
1122 |
< |
160 ± 10 |
180 |
< |
| 2510 = rnpB |
4956029–4956732 |
452 |
< |
849 |
< |
208 |
200 |
< |
| 2626 |
5196833–5197184 |
1464 |
> |
576 |
> |
200 |
> |
|
| 2667 = prrF1,2 |
5283906–5284368 |
798 |
> |
888 |
< |
110, 110 |
100, 110 f |
>> |
|
a Transcripts that were also found by Livny et al. [20] are shown in boldface b Dir., direction of flanking genes c Lengths of transcripts described in other studies are indicated by their experimental values; otherwise, predicted lengths are estimates ± 10 nt d Bands that were observed in cells grown in NYB, GGP or MME medium; estimated size ± 10 nt e Not tested in GGP and MME medium f No transcript was observed in cells grown in NYB or GGP in exponential phase; transcripts were present in stationary phase cells grown in all media g Dir., direction of sRNA genes. When rho-independent terminators are predicted to be present, the direction of the sRNA is annotated (> or <). When the direction is unknown, this is indicated by a question mark | ||||||||
González et al. BMC Genomics 2008 9:167 doi:10.1186/1471-2164-9-167 |
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