Table 1 |
|||||
|
Small RNAs mapped on tRNAs |
|||||
|
tRNA |
Major location |
Major library |
# of small RNA sequences |
Amino acid frequency (ratio) |
tRNA copies |
|
|
|||||
|
Lys |
5'-end |
Long |
4183 |
2176460 (0.056) |
34 |
|
His* |
5'-/3'-ends |
Long |
4080 |
1003346 (0.026) |
11 |
|
Ile* |
3'-end |
long |
1285 |
1712123 (0.044) |
24 |
|
Glu* |
3'-end |
short |
1005 |
2648589 (0.068) |
25 |
|
Ala |
3'-end |
long |
974 |
2696299 (0.070) |
43 |
|
Asp* |
3'-end |
short |
697 |
1815881 (0.047) |
18 |
|
Thr |
5'-/3'-end |
long |
687 |
2053702 (0.053) |
24 |
|
Arg |
5'-/3'-ends |
long |
576 |
2193876(0.057) |
29 |
|
Asn |
3'-end |
long |
477 |
1392573 (0.036) |
29 |
|
Gln |
5'-/3'-ends |
long |
426 |
1797262 (0.046) |
32 |
|
Pro |
center, 3'-end |
long |
377 |
2366359 (0.061) |
21 |
|
Gly |
center, 3'-end |
short/long |
230 |
2552265 (0.066) |
31 |
|
Met |
5'-/3'-ends |
long |
167 |
853648 (0.022) |
20 |
|
Cys |
3'-end |
long |
161 |
894927 (0.023) |
30 |
|
Tyr |
3'-end |
long |
152 |
1062246 (0.027) |
15 |
|
Leu |
5'-end |
short/long |
102 |
3877199 (0.100) |
38 |
|
Val |
- |
- |
50 |
2353706 (0.061) |
32 |
|
Trp |
- |
- |
23 |
510256 (0.013) |
9 |
|
Ser |
- |
- |
17 |
3136765 (0.081) |
28 |
|
Phe |
- |
- |
8 |
1465755 (0.038) |
12 |
|
|
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|
*... Small RNA sequences subjected to Northern blot |
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|
Kawaji et al. BMC Genomics 2008 9:157 doi:10.1186/1471-2164-9-157 |
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