Table 2

Pseudogenes described in ES114 version 2.0.

Locus tag
Previous
Homolog
Defect in V. fischeri ES114 versus MJ11
Target

VF_0198
VF0198, VF0199
ugd, UDP-glucose 6-dehydrogenase, capsule biosynthetic gene
+1 frameshift
108
VF_1268
VF1267, VF1268
umuC, DNA polymerase V subunit
amber nonsense codon and 5 bp repeat expansion
124
VF_A0141
VFA0141
putative transporter, NadC family protein
-1 frameshift
175
VF_A0270
VFA0270, VFA0271
transcriptional regulator, LysR family
amber nonsense codon
157
VF_A0466
VFA0466
N-acetylglucosaminyltransferase
-1 frameshift
177

Mandel et al. BMC Genomics 2008 9:138   doi:10.1186/1471-2164-9-138