Table 2

Mycobacterium avium large sequence polymorphisms. Genomotypes from the present study that lack the indicated sequences are listed. Supporting evidence from previous studies is provided and includes the designations used to describe individual polymorphisms. ID numbers correspond to Figure 4.

Number

ORF start

ORF end

Present study

Tizard 1998

Dohmann 2003

Paustian 2005

Semret 2005

Marsh 2005

Marsh 2006

Talaat 2006

Semret 2006


MAP0072c

MAP0076

HOM (5835cc, 5836cc)

1

MAP0092

MAP0108

HOM, AV-SI

MAP_RD1

LSPP1

MAP-1

2

MAP0282c

MAP0284c

HOM, AV-SI

LSPP2

MAP-2

3

MAP0387

MAP0389

HOM, AV-SI

LSPP3

MAP-3

4

MAP0746

MAP0766c

AV-SI (6007, 6049)

5

MAP0850c

MAP0866

HOM, AV-SI

RDA I130

MAP_RD2

LSPP4

MAP-4

6

MAP0956

MAP0967

HOM

LSPP5

MAP-5

7

MAP1230

MAP1237c

HOM

GS

LSPP6

MAP-6

8

MAP1344

MAP1349c

HOM, AV-SI

LSPP7

MAP-7

9

MAP1376c

MAP1381

AV-SI

10

MAP1424c

MAP1465

AV-SI (6007, 6049, 6058, ATCC49884)

11

MAP1432

MAP1438c

MAP Sheep

12

MAP1485c

MAP1491

MAP Sheep

S 1

LSPA20

13

MAP1631c

MAP1638c

HOM

LSPP8

MAP-8

14

MAP1718c

MAP1727

HOM

RDA III10

LSPP9

MAP-9

15

MAP1721c

MAP1723

HOM, AV-SI

16

MAP1728c

MAP1744

MAP Sheep

RDA3

S 2

17

MAP1729c

MAP1732c

AV-SI

LSPP9

MAP-10

18

MAP2026

MAP2029c

HOM

LSPP10

MAP-11

19

MAP2148

MAP2158

HOM, AV-SI

MAP_RD3

LSPP11

MAP-12

20

MAP2178

MAP2196

HOM, AV-SI

MAP_RD4

LSPP12

MAP-13

21

MAP2325

MAP2325

S 3

22

MAP2372

MAP2375c

AV-SI (5001, 6006, 6058, ATCC49884)

MAP2523c

MAP2532

HOM (5835cc, 5836cc)

23

MAP2751

MAP2769c

HOM, AV-SI

MAP_RD5

LSPP13

MAP-14

24

MAP2963c

MAP2965c

HOM, AV-SI

Unnamed

MAP-15

25

MAP3067c

MAP3079c

AV-SI (5001, 6006, 6058, ATCC49884)

26

MAP3721

MAP3776c

HOM, AV-SI

MAP_RD6

LSPP14/15

MAP-16

27

MAP3814

MAP3818

HOM

RDA II60

MAP_RD7

LSPP16

28

MAP4266

MAP4270

HOM, AV-SI

LSPP17

MAP-17

MAA, MAS

29

MAP4326c

MAP4328c

HOM

MAP-18


Paustian et al. BMC Genomics 2008 9:135   doi:10.1186/1471-2164-9-135

Open Data