Table 1

Mycobacterium avium large sequence polymorphisms. Genomotypes from the present study that contain the indicated sequences are listed. Supporting evidence from previous studies is provided and includes the designations used to describe individual polymorphisms.

ORF start

ORF end

Startb

Endb

Present study

Dohmann 2003

Semret 2004

Talaat 2006

Semret 2006


MAH0238

254394

294226

HOM

LSPA 3

MAV-1

MAH0439

461414

492800

HOM

LSPA 7

MAV-2

MAH0636

666033

675725

HOM

LSPA12

MAV-3

MAH0722

747095

794450

HOM

LSPA 5

MAV-4

MAH1019

MAH1021

1049356a

HOM, AV-SI

MAH1354

1421722

1439626

HOM

LSPA 14

MAV-5

MAH1374

1444205

1463365

HOM

LSPA 13

MAV-6

MAH1663

1795281

1991691

HOM

LSPA 4

MAV-7

MAH1834

MAH1858

1992430

HOM, MAP Sheep

PIG-RDA 20

LSPA 4-II

MAH1940

2097907

2100883

HOM

MAV-8

MAH2053

2220320

2241163

HOM

LSPA 10

MAV-9

MAH2085

2259120

2271610

HOM

MAV-10

MAH2254

2462693

2466285

HOM

MAV-11

MAH2331

2549555

2730999

HOM

LSPA 1

MAV-12

MAH2591

2815625

2821149

HOM

MAV-13

MAH2766

3008716

3036980

HOM

MAV-14

MAH2772

MAH2791

3014473a

HOM, MAP Sheep

PIG-RDA 30

MAH2829

MAH2830

3077414a

AV-SI

MAH2916

3214820

3219550

HOM, AV-SI

MAV-15

MAH3023

MAH3026

3340393

3384549

HOM, AV-SI

MAV-16

MAH3034

3392586

3413804

HOM

LSPA 9

MAV-17

MAH3041

MAH3052

3399659a

HOM, MAP Sheep, AV-SI

MAH3156

3523417

3527334

HOM

MAV-18

MAH3296

3670518

3675686

HOM

MAV-19

MAH3542

3917752

3939034

HOM

LSPA 2

MAV-20

MAH3858

MAH3866

4254594

4261488

HOM, AV-SI

MAV-21

MAP4086

MAP4091

4674473

4682256

HOM, MAP, AV-SI

LSPA11

MAH4657

MAH4665

5122371

5132301

HOM, AV-SI

LSPA 8

MAV-22

MAH4704

MAH4709

5174641

5270187

HOM, AV-SI

LSPA 6

MAV-23

MAH4893

MAH4910

5378903

5395102

HOM, MAP Sheep, AV-SI

PIG-RDA 10

MAV-24

LSPA 18


a Approximate.

b Nucleotide position within MAH 104 genome

Paustian et al. BMC Genomics 2008 9:135   doi:10.1186/1471-2164-9-135

Open Data