Table 1

Sequence sources and statistics for the three sequential ESTIMA:Songbird assemblies

ESTIMA:Songbird

BUILD 1

BUILD 2

BUILD 3


Sequence Source

Raw reads

After filtering

20 K cDNA microarray

Lund/Affy microarray


SB01

2,880

1,840

SB02

18,720

16,360

SB03 (a)

19,104

17,032

SB03 (b)

9,120

5,717

Duke chromatograms

36,469

23,225

Duke from NCBI

17,312

16,442

SB05

11,328

10,056

SB06

11,040

9,760

Rockefeller

9,845

9,764


Raw reads

40,704

86,293

99,349

# SEQS INTO PTA

35,232

58,457

86,784

Pure singlets

10,123

11,823

13,908

Clustered singlets

1,900

2,457

3,662

Total singlets

12,023

14,280

17,570

Contigs

5,855

8,348

14,088

Total unique sequences

17,878

22,628

31,658

Total redundant sequences

17,354

35,829

55,126

Redundancy

49%

61%

64%


Replogle et al. BMC Genomics 2008 9:131   doi:10.1186/1471-2164-9-131

Open Data