Table 1

Sequence sources and statistics for the three sequential ESTIMA:Songbird assemblies



ESTIMA:Songbird



BUILD 1
 BUILD 2
 BUILD 3



Sequence Source
 Raw reads
 After filtering
 20 K cDNA microarray
 Lund/Affy microarray
SB01
 2,880
 1,840
 √
 √
 √
SB02
 18,720
 16,360
 √
 √
 √
SB03 (a)
 19,104
 17,032
 √
 √
 √
SB03 (b)
 9,120
 5,717
√
 √
Duke chromatograms
 36,469
 23,225
√
Duke from NCBI
 17,312
 16,442

√
SB05
 11,328
 10,056

√
SB06
 11,040
 9,760

√
Rockefeller
 9,845
 9,764

√
Raw reads
 40,704
 86,293
 99,349
# SEQS INTO PTA
 35,232
 58,457
 86,784
Pure singlets
 10,123
 11,823
 13,908
Clustered singlets
 1,900
 2,457
 3,662
Total singlets
 12,023
 14,280
 17,570
Contigs
 5,855
 8,348
 14,088
Total unique sequences
 17,878
 22,628
 31,658
Total redundant sequences
 17,354
 35,829
 55,126
Redundancy
 49%
 61%
 64%

Replogle et al. BMC Genomics 2008 9:131   doi:10.1186/1471-2164-9-131