Table 3

Sequence identity analyses of L.salmonis proteins with homologous proteins in crustaceans, insects, fish and humans

Contig no.

Annotation

No AA

Crustaceans

Aedes aegypti

Drosophila melanogaster

Anopheles gambiae

Danio rerio

Homo sapiens


Contig 504

Actin

376

95

96

96

96

95

95

Contig 15

40S ribosomal protein S13

151

85

80

79

80

84

87

Contig 20

60S ribosomal protein L5

296

67

68

67

66

66

68

Contig 211

Glyceraldehyde-3-phosphate dehydrogenase

332

76

74

74

76

76

75

Contig 222

QM protein

219

81

78

81

79

77

77

Contig 233

60S ribosomal protein L7A

266

69

66

64

60

68

68

Contig 286

translation initiation factor 4A2 isoform 2

413

71

69

69

69

72

73

Contig 307

glucosamine-6-phosphate isomerase

268

70

72

71

71

69

70

Contig 340

elongation factor 1-alpha

459

71

76

77

76

74

74

Contig 392

receptor for activated protein kinase C-like

316

85

79

80

78

78

78

Contig 468

14-3-3-like protein (Leonardo protein)

252

80

83

85

82

81

79

Contig 73

Adenosylhomocysteinase

411

76

73

73

73

73

73

Contig 81

S5e ribosomal protein

213

84

83

81

77

89

84

Contig 83b

phospholipid-hydroperoxide glutathione peroxidase

182

65

54

42

46

59

52

Contig 109

Adenosine kinase (AK)

332

38

50

45

44

50

51

Contig 192

Calmodulin (CaM)

149

100

100

100

100

97

97

Contig 229

Cystathionine-beta-synthase

381

58

54

52

52

59

57

Contig 264

histone H4

103

100

100

100

100

99

99

Contig 325

ER protein disulfide isomerase

401

56

55

53

53

42

52

Contig 363

Enolase

290

76

76

76

76

74

74

Contig 28

serine-type enodpeptidase (trypsin-lik)

226

38

37

34

35

32

28

Contig 29

metalloproteinase

322

35

38

36

38

37

31

Contig 56

serine protease

254

31

31

30

34

29

25

Contig 88

cathepsin L

312

54

51

51

50

50

49

Contig 193

cysteine protease (cathepsin)

372

31

31

32

31

33

33

Contig 434

carboxypeptidase

241

40

29

33

30

26

27

Contig 131

heat shock protein 70

335

69

76

75

76

79

78


Mean

66.7

65.9

65.0

64.7

65.5

65.0


Eichner et al. BMC Genomics 2008 9:126   doi:10.1186/1471-2164-9-126

Open Data