Table 1

Characteristics of genes encoding LEA proteins in Arabidopsis thaliana

Number

AGI code

Description NCBI

Pfam family

group

GRAVY

predicted subcellular localization

expression


1

At1g01470

LEA14

LEA_2

LEA_2

0.056

other

Everywhere

2

At1g02820

LEA3 family protein

LEA_3

LEA_3

-0.491

Chloroplast

Stress

3

At1g03120

seed maturation family protein *

SMP

SMP

-0.564

other

Seed

4

At1g20440

Dehydrin, COR47

dehydrin

dehydrin

-1.257

other

Non-seed + stress

5

At1g20450

dehydrin ERD10, LTI45

dehydrin

dehydrin

-1.34

other

Non-seed + stress

6

At1g32560

group 1 domain-containing protein

LEA_1

LEA_1

-1.042

other

Seed

7

At1g52690

similar to LEA protein from B. napus

LEA_4

LEA_4

-1.317

other

Bud, seed + stress

8

At1g54410

dehydrin family protein

dehydrin

dehydrin

-1.868

other

Non-seed + stress

9

At1g72100

LEA domain-containing protein

LEA_4

LEA_4

-0.46

secreted

Seed

10

At1g76180

dehydrin ERD14

dehydrin

dehydrin

-1.265

other

Non-seed

11

At2g03740

LEA domain-containing protein

LEA_4

LEA_4

-0.703

Chloroplast

Bud

12

At2g03850

LEA domain-containing protein

LEA_4

LEA_4

-0.496

Chloroplast

Bud

13

At2g18340

LEA domain-containing protein

LEA_4

LEA_4

-0.93

secreted

Seed

14

At2g21490

dehydrin family protein

dehydrin

dehydrin

-1.032

other

Seed

15

At2g23110

similar to LEA proteins

-

PvLEA18

-1.059

other

Seed

16

At2g23120

unknown protein

-

PvLEA18

-1.001

other

Everywhere

17

At2g33690

similar to PvLEA18

-

PvLEA18

-1.311

other

Bud

18

At2g35300

LEA_1 domain containing protein

LEA_1

LEA_1

-1.156

other

Salt

19

At2g36640

LEA protein AtECP63

LEA_4

LEA_4

-1.023

other

Seed

20

At2g40170

Em-like protein GEA6/EM6

LEA_5

LEA_5

-1.407

other

Everywhere

21

At2g41260

Late embryogenesis abundant protein M17

-

AtM

-0.704

secreted

Seed

22

At2g41280

Late embryogenesis abundant protein M10

-

AtM

-0.011

secreted

Seed

23

At2g42530

cold-regulated protein COR15b

-

LEA_4

-0.542

Chloroplast

Non-seed + stress

24

At2g42540

cold-regulated protein COR15a

-

LEA_4

-0.554

Chloroplast

Non-seed + stress

25

At2g42560

LEA domain-containing protein

LEA_4

LEA_4

-0.978

other

Seed + salt

26

At2g44060

LEA domain-containing protein

LEA_2

LEA_2

-0.314

other

Non-seed + stress

27

At2g46140

LEA domain-containing protein

LEA_2

LEA_2

0.123

other

Seed + root

28

At3g02480

ABA-responsive protein-related

LEA_4

LEA_4

-1.213

other

Reproductive, seed + salt

29

At3g15670

LEA domain-containing protein

LEA_4

LEA_4

-1.369

other

Seed

30

At3g17520

LEA domain-containing protein

LEA_4

LEA_4

-1.047

secreted

Seed

31

At3g22490

RAB28

SMP

SMP

-0.193

other

Seed

32

At3g22500

Seed maturation protein AtECP31

SMP

SMP

-0.341

other

salt

33

At3g50970

dehydrin Xero2/LTI30

dehydrin

dehydrin

-1.173

other

Everywhere

34

At3g50980

dehydrin Xero1

dehydrin

dehydrin

-1.053

other

Seed

35

At3g51810

putative embryonic abundant protein AtEM1

LEA_5

LEA_5

-1.468

other

Seed

36

At3g53040

LEA domain-containing protein

LEA_4

LEA_4

-1.194

other

Seed

37

At3g53770

LEA protein-related

LEA_3

LEA_3

-0.79

Mitochondrion

Seed

38

At4g02380

LEA_3 family protein SAG21

LEA_3

LEA_3

-0.36

Chloroplast

Everywhere

39

At4g13230

LEA domain-containing protein

LEA_4

LEA_4

-0.831

Mitochondrion

Bud

40

At4g13560

LEA domain-containing protein

LEA_4

LEA_4

-1.181

other

Reproductive

41

At4g15910

drought-responsive protein AtDI21

LEA_3

LEA_3

-0.526

Chloroplast

Everywhere

42

At4g21020

LEA domain-containing protein

LEA_4

LEA_4

-1.291

Mitochondrion

Seed

43

At4g36600

LEA domain-containing protein

LEA_4

LEA_4

-1.072

Mitochondrion

Seed

44

At4g38410

putative dehydrin

dehydrin

dehydrin

-1.629

other

Root

45

At4g39130

dehydrin family protein

dehydrin

dehydrin

-0.774

other

Seed + bud

46

At5g06760

LEA group 1 domain-containing protein

LEA_1

LEA_1

-0.815

other

Seed + salt

47

At5g27980

seed maturation family protein

SMP

SMP

-0.373

other

Bud

48

At5g44310

LEA domain-containing protein

LEA_4

LEA_4

-1.409

Chloroplast

Seed

49

At5g53260

seed maturation family protein

SMP

SMP

-0.273

Chloroplast

Seed

50

At5g53270

seed maturation family protein

SMP

SMP

-0.103

other

Seed

51

At5g66400

dehydrin RAB18

dehydrin

dehydrin

-1.182

other

Seed + stress


The annotation and description in the NCBI database, and the protein family domains according to the Pfam database. The numbers in the first column are used throughout the paper as a shortcut to unambigously identify the different genes and proteins. GRAVY (grand average of hydropathy) quantitates the hydrophilicity of the proteins based on amino acid composition. Subcellular localization was predicted from protein sequence analysis using the targetP algorithm. The expression information is based on the quantitative RT-PCR experiments reported in Figure 4, Table 4 and 5 and Additional file 3.

Hundertmark and Hincha BMC Genomics 2008 9:118   doi:10.1186/1471-2164-9-118

Open Data