|
List of the EST database of Nilaparvata lugens |
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| Library |
Tissue/sex/stage |
Vector used |
No. of clones |
Average length (bp) |
%"N" |
No. of clusters |
|
|
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| AA |
Abdomen, female, 0–1 day |
ZAP |
609 |
589.7 |
0.014 |
435 |
| AB |
Abdomen, female, 0–1 day |
ZAP |
1027 |
601.9 |
0.011 |
667 |
| AC |
Abdomen, male, 0–1 day |
ZAP |
588 |
599.7 |
0.022 |
493 |
| AD |
Abdomen, male, 0–1 day |
ZAP |
967 |
594.9 |
0.102 |
726 |
| EA |
Egg, 0–1.5 day |
pGEM |
3726 |
652.0 |
0.051 |
2371 |
| EB |
Egg, 3–5 day |
pGEM |
2055 |
576.3 |
0.076 |
941 |
| HA |
Head, female, 0–1 day |
ZAP |
777 |
520.6 |
0.018 |
111 |
| HT |
Head-thorax, male, 0–1 day |
ZAP |
2555 |
673.9 |
0.070 |
1132 |
| MA |
Midgut, female, 0–5 day |
pGEM |
3594 |
637.5 |
0.051 |
1252 |
| MB |
Midgut, male, 0–5 day |
pGEM |
2095 |
606.4 |
0.117 |
847 |
| NA |
Whole nymph, 1st instar |
pGEM |
3269 |
633.8 |
0.096 |
1714 |
| NB |
Whole nymph, 4th instar |
ZAP |
3710 |
624.7 |
0.058 |
1749 |
| OA |
Ovary, 0–1 day |
ZAP |
967 |
511.5 |
0.119 |
689 |
| OB |
Ovary, 4–5 day |
ZAP |
822 |
601.9 |
0.028 |
329 |
| OC |
Ovary, 4–5 day |
ZAP |
2225 |
604.4 |
0.079 |
989 |
| SG |
Salivary glands, female, 0–5 day |
pGEM |
2383 |
640.8 |
0.083 |
723 |
| TA |
Testis, 0–1 day |
ZAP |
1525 |
575.9 |
0.045 |
895 |
| TH |
Thorax, 0–1 day |
ZAP |
4228 |
693.1 |
0.029 |
1657 |
| Total |
37122 |
626.7 |
0.065 |
10261 |
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ZAP, lambda ZAP II (pBluescript) phage vector; pGEM, pGEM-t plasmid vector; %"N", percentage of ambiguous nucleotides. Ovary and testis includes the accessory glands of the reproductive organs. Clustering was performed using CLOBB [25]. ESTs are deposited in the DNA databases under accession numbers DB20956–DB858077 (37,122 entries). | ||||||
Noda et al. BMC Genomics 2008 9:117 doi:10.1186/1471-2164-9-117 |
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