Table 1

Genes comprising the bovine BPI-like locus

Gene

Alt. Names1

Access. Number

cDNA length(bp)

length aa

pred. MW

# exons

start of first exon

end of last exon

% aa identity2


BPIL1

LPLUNC2, Z

ENSBTAG000000192003,7

1380

459

49

15

145,091

163,442

73 (h), 63 (m)

BPIL3

LPLUNC6, Y

XM_5967625,7

1332

443

49

17

168,578

187,389

79 (h), 68 (m)

RYA3

LPLUNC3

XM_6002935,7

1434

477

50

15

196,342

213,257

80 (h), 82 (m)

RY2G5

LPLUNC4

XM_5939195,7

1722

574

60

15

222,648

256,128

84 (h), 85 (m)

XM_595323

XM_595323

362

121

13

3

301,883

304,761

BSP30A

NM_174803

976

239

26

9

343,495

354,041

BSP30C

TC2770474,7

1180

251

28

8

374,201

383,493

BSP30D

Genescan6,7

694

231

25

6

421,589

432,785

BSP30B

NM_174802

980

240

27

9

453,354

463,730

BASE

Latherin

Genescan6,7

687

229

26

7

484,319

495,374

42 (h)

SPLUNC3

X

DQ677839

1029

239

27

7

516,034

527,454

67 (h), 63 (m)

PLUNC

SPLUNC1

NM_174426

1049

255

26

9

536,029

543,093

73 (h), 65 (m)

VEMSGP

LPLUNC1

NM_174697

1624

473

52

15

573,091

594,293

56 (h), 49 (m)

LPLUNC5

Genescan6,7

1551

517

57

15

600,122

618,771

50 (h), 59 (m)


(1) [10, 19]

(2) Amino acid sequence identity obtained using ClustalW against either the human (h) or mouse (m) ortholog.

(3) Ensembl database [34]

(4) TIGR database [35]

(5) Bovine RefSeq predicted coding sequence trimmed to align with human and mouse homologs

(6) Predicted cDNA sequence generated from genomic contig using Genescan)

(7) See supplementary material sTable 1 for final nucleotide and amino acid sequences used in the analyses

Wheeler et al. BMC Genomics 2007 8:75   doi:10.1186/1471-2164-8-75

Open Data