Open Access Highly Accessed Research article

Identification of plant promoter constituents by analysis of local distribution of short sequences

Yoshiharu Y Yamamoto12*, Hiroyuki Ichida13, Minami Matsui4, Junichi Obokata2, Tetsuya Sakurai5, Masakazu Satou3, Motoaki Seki3, Kazuo Shinozaki5 and Tomoko Abe1

Author Affiliations

1 Application and Development Group, RIKEN FRS, Hirosawa 2-1, Wako, Saitama 351-0198, Japan

2 Center for Gene Research, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan

3 Graduate School of Science and Technology, Chiba University, Matsudo 648, Matsudo, Chiba 271-8510, Japan

4 RIKEN Genomic Sciences Center, Suehirocho 1-7-22, Tsurumiku, Yokohama, Kanagawa 230-0045, Japan

5 RIKEN Plant Science Center, Suehirocho 1-7-22, Tsurumiku, Yokohama, Kanagawa 230-0045, Japan

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BMC Genomics 2007, 8:67  doi:10.1186/1471-2164-8-67

Published: 8 March 2007

Additional files

Additional file 1:

Complete list of LDSS-positive hexamers of Arabidopsis (Table S1.pdf). Contains hexamer sequences and parameters.

Format: PDF Size: 57KB Download file

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Additional file 2:

Characteristics of random distribution (FigS1.pdf). Contains graphs to show relationship between a LDSS parameter and a size of population (Total Area).

Format: PDF Size: 57KB Download file

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Additional file 3:

Arabidopsis core octamers (Table S2.pdf). Contains octamer sequences and parameters.

Format: PDF Size: 69KB Download file

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Additional file 4:

Rice core octamers (Table S3.pdf). Contains octamer sequences and parameters.

Format: PDF Size: 68KB Download file

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Additional file 5:

Arabidopsis REG octamers (Table S4.pdf). Contains octamer sequences and parameters.

Format: PDF Size: 57KB Download file

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Additional file 6:

Rice REG octamers (Table S5.pdf). Contains octamer sequences and parameters.

Format: PDF Size: 50KB Download file

This file can be viewed with: Adobe Acrobat Reader

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Additional file 7:

Relationship between Arabidopsis REG and PLACE entry (Table S6.xls). A table showing which octamer REG corresponds to which PLACE entry, and vice versa.

Format: XLS Size: 52KB Download file

This file can be viewed with: Microsoft Excel Viewer

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