|
Asbestos-related genes. Previously identified potential asbestos-associated genes represented in significant clusters of all cell lines. (Affymetrix IDs are available upon request) |
||||
| Asbestos-associated gene |
A549 cluster |
Beas-2B cluster |
MeT5A cluster |
Chr. loc |
|
|
||||
| Mesothelioma-associated genes* |
||||
| BIRC5 |
5 |
13 |
2 |
17q25 |
| BTG2 |
5 |
7 |
3 |
1q32 |
| CALU |
9 |
8 |
3 |
7q32 |
| CALU |
9 |
8 |
3 |
7q32 |
| COL1A1 |
5 |
10 |
2 |
17q21.33 |
| COL4A1 |
5 |
8 |
2 |
13q34 |
| COL5A1 |
5 |
14 |
2 |
9q34 |
| COL6A2 |
5 |
3 |
2 |
21q22 |
| FN1 |
9 |
6 |
3 |
2q34 |
| HMGB1 |
9 |
3 |
2 |
13q12 |
| HNRPH1 |
5 |
7 |
2 |
5q35 |
| IGFBP4 |
4 |
10 |
3 |
17q21.2 |
| KIBRA |
5 |
6 |
3 |
5q34 |
| LU |
2 |
3 |
2 |
19q13 |
| LU |
2 |
10 |
3 |
19q13 |
| NF2 |
5 |
7 |
2 |
22q12 |
| PDLIM7 |
2 |
7 |
2 |
5q35 |
| PDLIM7 |
5 |
7 |
2 |
5q35 |
| PEG10 |
9 |
8 |
3 |
7q21 |
| POM121 |
4 |
13 |
2 |
7q11 |
| PTPRF |
5 |
13 |
2 |
1p34 |
| PXN |
5 |
13 |
2 |
12q24 |
| TPD52L1 |
5 |
6 |
1 |
6q22.31 |
| TP53 |
5 |
7 |
2 |
17p13 |
| TXN |
11 |
1 |
1 |
9q31 |
| VEGF |
9 |
8 |
3 |
6p12 |
| VEGF |
9 |
8 |
3 |
6p12 |
| VIL2 |
8 |
16 |
2 |
6q25.3 |
| Human homologs of asbestos associated murine genes† |
||||
| BIRC4 |
6 |
7 |
1 |
Xq25 |
| BIRC4 |
7 |
13 |
1 |
Xq25 |
| BMP2 |
5 |
14 |
1 |
20p12 |
| CD44 |
9 |
14 |
2 |
11p13 |
| CSNK2A1 |
9 |
13 |
2 |
20p13 |
| CTSB |
1 |
14 |
1 |
8p22 |
| FAS |
1 |
8 |
1 |
10q24 |
| FAS |
1 |
8 |
1 |
10q24 |
| IQGAP1 |
9 |
6 |
3 |
15q26 |
| MAP4K4 |
1 |
8 |
3 |
2q11.2 |
| PLEC1 |
9 |
6 |
2 |
8q24 |
| PTPN14 |
9 |
6 |
3 |
1q32 |
| PTPRF |
5 |
13 |
2 |
1p34 |
| RHOA |
9 |
6 |
2 |
3p21 |
| TP53 |
5 |
7 |
2 |
17p13 |
| TRAM1 |
5 |
8 |
2 |
8q13 |
| VAV2 |
5 |
13 |
2 |
9q34 |
| Other asbestos-associated genes‡ |
||||
| ADD3 |
5 |
8 |
3 |
10q24 |
| CASP8 |
9 |
6 |
2 |
2q33.1 |
| CDK10 |
5 |
13 |
2 |
16q24 |
| COL12A1 |
9 |
8 |
2 |
6q13-14.1 |
| FOSL2 |
2 |
3 |
3 |
2p23 |
| IKBKB |
9 |
16 |
2 |
8p11 |
| KRAS |
7 |
13 |
1 |
12p12 |
| L1CAM |
2 |
11 |
2 |
Xq28 |
| MAPK1 |
3 |
5 |
3 |
22q11 |
| MAPK1 |
9 |
6 |
2 |
22q11 |
| MAPK1 |
9 |
6 |
2 |
22q11 |
| NFKB2 |
5 |
13 |
3 |
10q24 |
| PCDHGA6§ |
12 |
10 |
3 |
5q31 |
| PRKCD |
5 |
6 |
3 |
3p21 |
|
* [17, 36–39] †[6, 20] ‡ [4, 18, 19, 55, 56] § The probe also corresponds to PCDHGC3 /// PCDHGB4 /// PCDHGA8 /// PCDHGA12 /// PCDHGC5 /// PCDHGC4 /// PCDHGB7 /// PCDHGB6 /// PCDHGB5 /// PCDHGB3 /// PCDHGB2 /// PCDHGB1 /// PCDHGA11 /// PCDHGA10 /// PCDHGA9 /// PCDHGA7 /// PCDHGA6 /// PCDHGA5 /// PCDHGA4 /// PCDHGA3 /// PCDHGA2 /// PCDHGA1 | ||||
Nymark et al. BMC Genomics 2007 8:62 doi:10.1186/1471-2164-8-62 |
||||