|
Genes exhibiting differential mRNA abundance in eggs of varying quality identified from the microarray analysis |
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| Symbol |
Genbank |
Sigenae contig |
Symbol |
swissprot_hit_description |
Score |
UniGene |
|
|
||||||
| tcbr0001.b.08 |
NO CONTIG |
|||||
| 1RT42N11_B_G06 |
CA378261 |
tcba0024c.d.03_5.1.s.om.8 |
AGM1 |
HUMAN (O95394) Phosphoacetylglucosamine mutase (EC 5.4.2.3) |
1065 |
Omy.22147 |
| 1RT120K08_C_F04 |
CA362248 |
CA362248.1.s.om.8 |
ALG2 |
HUMAN (Q9H553) Alpha-1,3-mannosyltransferase ALG2 (EC 2.4.1.-) |
662 |
|
| 1RT85M16_C_G08 |
CA345100 |
tcac0001c.c.13_3.1.s.om.8 |
APOB |
HUMAN (P04114) Apolipoprotein B-100 precursor |
630 |
Omy.8599 |
| tcay0008.m.21 |
BX301016 |
tcav0001c.l.14_3.1.s.om.8 |
BMP7 |
MOUSE (P23359) Bone morphogenetic protein 7 precursor (BMP-7) |
1154 |
Omy.19556 |
| tcbk0001.p.13 |
BX873334 |
tcbk0001c.p.13_5.1.s.om.8 |
CASZ1 |
HUMAN (Q86V15) Probable transcription factor CST |
234 |
Omy.20281 |
| tcay0007.f.20 |
BX300279 |
tcay0007b.f.20_5.1.s.om.8 |
CF188 |
RAT (Q5FWS4) Protein C6orf188 homolog |
468 |
Omy.26998 |
| tcba0030.i.17 |
BX867113 |
tcay0040b.g.08_5.1.s.om.8 |
CUL5 |
RABIT (Q29425) Cullin-5 (CUL-5) |
1694 |
Omy.21358 |
| 1RT63D22_D_B11 |
CA343059 |
CA343059.1.s.om.8 |
DCPS |
MOUSE (Q9DAR7) Scavenger mRNA decapping enzyme DcpS |
195 |
|
| tcba0010.c.10 |
BX861936 |
tcba0010c.c.10_5.1.s.om.8 |
DUSP24 |
HUMAN (Q9Y6J8) Dual specificity protein phosphatase 24 |
688 |
|
| 1RT104M18_C_G09 |
CA347317 |
tcay0009b.d.09_3.1.s.om.8 |
FGD5 |
MOUSE (Q80UZ0) FYVE, RhoGEF and PH domain containing protein 5 |
145 |
Omy.10646 |
| 1RT147H01_B_D01 |
CA350285 |
tcad0009a.n.22_3.1.s.om.8 |
GMCL1 |
HUMAN (Q96IK5) Germ cell-less protein-like 1 |
1353 |
Omy.2306 |
| tcbk0042.i.19 |
BX879311 |
tcav0003c.a.13_3.1.s.om.8 |
GTF2B |
RAT (P62916) Transcription initiation factor IIB |
1449 |
|
| tcay0006.d.12 |
BX299916 |
tcab0003c.m.12_5.1.s.om.8 |
HCFC1 |
MOUSE (Q61191) Host cell factor (HCF) (HCF-1) |
695 |
|
| tcay0009.k.03 |
BX302686 |
tcay0009b.k.03_5.1.s.om.8 |
KHK |
HUMAN (P50053) Ketohexokinase (EC 2.7.1.3) |
591 |
|
| 1RT68H23_B_D12 |
CA343227 |
CA343227.1.s.om.8 |
KIF4A |
XENLA (Q91784) Chromosome-associated kinesin KLP1 |
477 |
|
| tcbk0045.a.13 |
BX883207 |
tcbk0045c.a.13_5.1.s.om.8 |
LAMB2 |
HUMAN (P55268) Laminin beta-2 chain precursor (S-laminin) |
1097 |
|
| 1RT77F09_B_C05 |
CA354296 |
CA354296.1.s.om.8 |
LRTM1 |
PONPY (Q5R6B1) Leucine-rich repeat transmembrane neuronal protein 1 precursor |
410 |
|
| tcbk0030.p.11 |
BX885788 |
tcbk0030c.p.11_5.1.s.om.8 |
MCF2L |
MOUSE (Q64096) Guanine nucleotide exchange factor DBS |
468 |
Omy.6690 |
| 1RT79A16_C_A08 |
CA355005 |
CA355005.1.s.om.8 |
NEK1 |
MOUSE (P51954) Serine/threonine-protein kinase Nek1 (EC 2.7.1.37) |
359 |
|
| 1RT94E22_C_C11 |
CA347857 |
CA347857.1.s.om.8 |
OBSCN |
CAEEL (O01761) Muscle M-line assembly protein unc-89 |
271 |
Omy.24205 |
| tcab0002.l.03 |
BX080933 |
tcab0002c.l.03_5.1.s.om.8 |
PDCL3 |
HUMAN (Q9H2J4) Phosducin-like protein 3 |
305 |
|
| tcbk0044.f.24 |
BX877936 |
tcbk0044c.f.24_5.1.s.om.8 |
PDGFRA |
XENLA (P26619) Alpha platelet-derived growth factor receptor precursor |
248 |
|
| tcay0023.m.15 |
BX310740 |
tcay0002b.p.08_3.1.s.om.8 |
PHB2 |
RAT (Q5XIH7) Prohibitin-2 (B-cell receptor-associated protein BAP37) (BAP-37) |
1013 |
Omy.9050 |
| tcay0029.o.17 |
BX314382 |
tcay0029b.o.17_3.1.s.om.8 |
RAB3IP |
HUMAN (Q96QF0) RAB3A-interacting protein (Rabin-3) |
206 |
|
| 1RT149L18_D_F09 |
CA350883 |
tcay0003b.j.14_3.1.s.om.8 |
TF |
SALSA (P80426) Serotransferrin I precursor (Siderophilin I) (STF I) |
663 |
Omy.9801 |
| 1RT142A22_C_A11 |
CA349568 |
CA349568.1.s.om.8 |
TGFBR2 |
RAT (P38438) TGF-beta receptor type II precursor (EC 2.7.1.37) |
1133 |
Omy.23150 |
| tcay0018.b.11 |
BX307666 |
tcab0003c.i.10_5.1.s.om.8 |
TLE1 |
MOUSE (Q62440) Transducin-like enhancer protein 1 (Groucho-related protein 1) |
2032 |
Omy.9672 |
| 1RT165F23_B_C12 |
CA388009 |
CA388009.1.s.om.8 |
VWF |
HUMAN (P04275) Von Willebrand factor precursor (vWF |
579 |
|
| tcay0018.a.17 |
BX307636 |
tcay0009b.k.21_3.1.s.om.8 |
ZNF16 |
HUMAN (P17020) Zinc finger protein 16 (Zinc finger protein KOX9) |
311 |
Omy.6191 |
| tcbk0009.g.08 |
BX875276 |
tcbk0009c.g.08_5.1.s.om.8 |
ZNF261 |
MOUSE (Q9JLM4) Zinc finger protein 261 (DXHXS6673E protein) |
254 |
Omy.2759 |
|
Genes subsequently studied by real time PCR are bolded. For each gene, clone name, GenBank accession number, official human symbol and corresponding UniGene cluster are indicated. The Sigenae contig name [60] used for Blast comparison against the Swiss-Prot database is shown. Resulting best hit and corresponding score are indicated. | ||||||
Bonnet et al. BMC Genomics 2007 8:55 doi:10.1186/1471-2164-8-55 |
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