Additional File 1:

Chromosomal coordinates of zebrafish TFRs. A tab delimited text file giving the danRer4/Zv6 chromosomal coordinates (Chromosome, start, end, ID) for all zebrafish TFRs. This data is also available in a browsable format with direct links to the UCSC genome browser at: http://jsm-group.imb.uq.edu.au/tfr07/ webcite

Format: TXT Size: 150KB Download file

Additional File 2:

Chromosomal coordinates of human TFRs. A tab delimited text file giving the hg18/NCBI 36 chromosomal coordinates (Chromosome, start, end, ID) for all zebrafish TFRs. This data is also available in a browsable format with direct links to the UCSC genome browser at: http://jsm-group.imb.uq.edu.au/tfr07/ webcite

Format: TXT Size: 287KB Download file

Additional File 3:

Chromosomal coordinates of mouse TFRs. A tab delimited text file giving the mm8/NCBI 36 chromosomal coordinates (Chromosome, start, end, ID) for all zebrafish TFRs. This data is also available in a browsable format with direct links to the UCSC genome browser at: http://jsm-group.imb.uq.edu.au/tfr07/ webcite

Format: TXT Size: 444KB Download file

Additional File 4:

Chromosomal coordinates of opossum TFRs. A tab delimited text file giving the monDom4 chromosomal coordinates (Chromosome, start, end, ID) for all zebrafish TFRs. This data is also available in a browsable format with direct links to the UCSC genome browser at: http://jsm-group.imb.uq.edu.au/tfr07/ webcite

Format: TXT Size: 152KB Download file

Additional File 6:

Supplemental figure S1. Orthologous pair of TFRs in zebrafish and human that have very different GC contents. (A) 30 kb region of the human genome chr22:18,108,001-18,138,000 enclosing the TFR hs22.13 (red bar, 63.9% GC) and the gene TBX1 shown in blue. (B) The syntenic region of zebrafish genome (chr5:30,507,001-30,537,000) showing the 11 kb TFR dr5.101 (35.4% GC) and the ortholog of human tbx1. Above each panel is a smoothed plot describing the percent GC content in 5 bp [31]. Both images are modified screen shots taken from the UCSC genome browser [31].

Format: PDF Size: 279KB Download file

This file can be viewed with: Adobe Acrobat Reader

Additional File 5:

Supplemental tables S1 and S2. Tables describing the presence of TFRs in X. tropicalis orthologous to the 58 zebrafish TFRs ≥ 10 kb found in all mammals and the pairs of potentially duplicated TFRs found in the zebrafish genome that were removed from the analysis.

Format: PDF Size: 95KB Download file

This file can be viewed with: Adobe Acrobat Reader