Table 2

Selected Clones from 3,594 Genes with Statistically Significant Data

Hit Description

Clone ID

Seta

2/1b

3/1b

4/1b

5/1b

6/1b

7/1b

ABC transporter family protein

Gm-c1004-1877

4

ND

0.01*

0.34

0.45

0.29

0.41

ACTIN 3

Gm-r1021-1826

12

6.86

15.7

61.03

46.93

34.02

14.79

Acetyl-CoA C-acyltransferase precursor

Gm-r1089-1999

2

1.92

3.21

2.80

2.18

0.86

0.82

Aconitate hydratase, cytoplasmic

Gm-r1088-7889

2

6.76

13.11

11.72

3.38

0.36

0.41

Aconitate hydratase, cytoplasmic

Gm-r1088-8860

2

5.74

9.62

7.89

6.48

1.42

1.31

Aconitate hydratase, cytoplasmic

Gm-c1027-1520

8

11.91

2.86

5.20

3.11

0.11

0.49

ADR11c

Gm-r1021-2201

6

86.28

68.88

500.50

394.00

111.00

35.81

Alpha-carboxyltransferase precursor

U40979

6

10.3

22.23

43.74

31.66

34.69

8.00

Alpha' subunit of beta-conglycinin

Gm-r1070-250

9

0.33

0.48

0.37

0.12

0.04

0.11

Aspartate aminotransferase glyoxysomal isozyme

Gm-r1021-3097

8

1.91

2.88

2.48

1.04

0.21

0.28

Aux/IAA protein

Gm-r1021-1791

12

ND

9.3

25.1

13.98

48.07

14.62

Auxin down regulated ADR12-2d

Gm-r1083-898

10

0.15

0.12

8.92

2.80

4.75

2.24

Auxin down regulated ADR6c

Gm-r1021-3058

12

20.27

62.24

65.15

124.60

244.60

424.00

Auxin down regulated ADS11-2c

Gm-c1045-5622

12

22.00

36.49

42.67

86.56

118.70

11.32

Auxin transport protein (BIG)

Gm-c1062-1281

1

2.71

22.68

8.69

0.33

0.15

0.77

Auxin-binding protein ABP19

Gm-r1083-1259

12

15.01

47.63

343.00

364.50

161.80

61.94

Auxin-induced protein 22C

Gm-c1031-62

12

0.98

7.15

11.41

14.73

15.68

30.11

Beta-amylasec

Gm-c1016-12242

4

0.02

0.01

0.36

5.75

8.39

6.11

Beta-conglycinin alpha-subunitc

Gm-c1007-354

4

0.46

0.06

0.06

0.27

3.95

2.51

Beta-tubulin

Gm-r1021-2933

12

0.89

3.96

23.40

39.75

18.31

2.58

Beta-tubulin

Gm-c1063-3619

2

4.77

3.74

7.31

3.51

0.70

0.99

Calnexinc

Gm-r1070-1638

8

2.12

2.23

4.88

1.64

0.34

0.36

Catalase

Gm-c1027-5248

6

3.36

3.22

4.13

3.06

1.13

2.15

Catalase

Gm-r1088-8229

6

3.25

3.63

4.91

3.57

1.41

2.17

Cell division cycle protein 48 homolog

Gm-c1019-5885

8

1.17

1.40

1.67

1.49

0.47

0.44

Cellulose synthase

Gm-c1046-518

1

0.77

4.01

11.08

0.53

0.37

1.40

Chalcone isomerase 1A

Gm-c1065-8978

5

2.04

2.29

2.47

0.59

0.18

0.35

Chalcone synthase CHS1

Gm-r1083-1425

5

1.05

0.69

0.82

0.61

0.07

0.17

Chlorophyll a/b binding proteind

Gm-r1083-1883

12

16.02

38.60

338.10

228.60

930.50

543.60

Chlorophyll a/b binding protein CP29

Gm-r1083-1764

12

7.55

16.05

122.70

147.30

131.10

83.41

Chloroplast ATP synthase (delta subunit)

Gm-r1021-3478

12

4.35

19.10

52.30

28.10

22.19

22.04

Chloroplast inner membrane import protein Tic22

Gm-r1070-7629

8

2.25

3.16

4.81

2.29

0.33

0.79

Chloroplast outer envelope protein 34

Gm-c1004-4823

8

2.74

1.70

3.54

5.35

0.16

0.17

Chloroplastic outer envelope membrane protein

Gm-r1089-5811

8

9.36

16.07

7.24

10.44

0.19

0.48

Citrate synthase, glyoxysomal precursor

Gm-r1070-1609

5

1.17

2.66

1.89

0.72

0.15

0.44

Citrate synthase

Gm-c1084-1995

8

1.28

1.68

2.04

1.18

0.44

0.43

Citrate synthase

Gm-r1070-5048

2

2.49

3.10

4.59

2.95

0.97

0.46

Citrate synthase

Gm-r1070-5826

2

1.93

2.44

4.09

2.36

0.80

0.51

Citrate synthase

Gm-c1028-1504

8

17.9

18.2

5.11

0.9

ND

0.28

Clathrin coat assembly like proteinc

Gm-r1083-3129

6

1.16

1.40

11.83

5.69

1.41

1.39

Coproporphyrinogen oxidase precursor

Gm-r1070-7634

8

1.58

1.57

2.24

1.89

0.60

0.35

Cystatin

Gm-r1088-2533

5

2.60

2.04

2.39

1.20

0.11

0.03

Cytochrome c1 precursor

Gm-c1044-29

6

2.97

2.21

12.37

11.96

1.23

1.85

Cytochrome b5

Gm-r1021-516

6

0.56

2.17

8.70

6.33

2.91

0.68

Cytochrome b5 reductase

Gm-r1021-1680

6

21.1

8.30

39.74

15.86

3.92

2.47

Cytochrome c1 precursor

Gm-c1044-29

6

2.97

2.21

12.37

11.96

1.24

1.86

Cytochrome oxidase subunit 2

Gm-c1013-3829

6

2.78

2.18

5.68

6.95

1.27

2.21

Cytochrome P450

Gm-r1083-2584

6

14.20

14.62

29.92

9.55

2.59

12.03

Cytosolic malate dehydrogenase

Gm-c1048-4886

6

22.21

7.55

67.02

67.17

7.15

10.83

Dehydration responsive element binding protein

Gm-r1088-7881

9

0.75

1.36

0.50

0.23

0.06

0.45

Elongation factor 1-alpha

Gm-r1089-3525

2

2.62

1.41

3.62

1.93

0.68

0.82

Expansin

Gm-c1040-1709

8

1.54

2.19

3.21

2.63

0.57

0.51

Ferredoxin – NADP reductase, chloroplast prec

Gm-c1077-506

5

1.12

2.50

1.09

1.04

0.16

0.20

Formate dehydrogenase

Gm-r1021-2716

12

1.35

1.35

7.48

4.81

2.81

4.93

Glutamate aminotransferase

Gm-c1065-9456

6

22.37

37.99

67.99

9.41

9.57

1.96

Glutathione S-transferase GST 10

Gm-r1083-1120

9

0.94

0.81

0.64

0.36

0.08

0.11

Glycolate oxidase

Gm-c1020-110

12

12.74

19.52

48.55

78.47

84.34

58.77

Histone H1, drought-inducible

Gm-r1021-1206

9

1.13

0.26

0.38

0.20

0.06

0.28

Isocitrate lyase, ICL 1

L02329

6

112.6

407.5

342.7

207.6

24.28

35.43

Isocitrate lyase, ICL 2

Gm-r1088-3791

6

153.1

462.0

325.9

212.9

36.24

29.45

Kunitz trypsin inhibitorc

Gm-c1007-455

8

4.66

10.61

8.00

5.25

0.13

0.34

Late-embryogenesis abundant protein

Gm-r1089-1615

9

0.54

0.63

0.55

0.41

0.03

0.08

LHCII type III chlorophyll a/b binding protein

Gm-r1083-1883

12

4.70

40.17

327.00

684.00

1322.00

693.70

Lipoxygenase L-5

Gm-c1071-6455

12

69.06

107.30

835.10

2362.00

789.20

1101.00

Long-chain acyl-CoA synthetase

Gm-r1070-2169

8

1.67

2.59

1.86

1.37

0.40

0.94

Malate dehydrogenase, glyoxysomal precursor

Gm-r1088-2531

2

6.44

11.18

10.50

3.20

0.58

0.81

Malate dehydrogenase, chloroplast

Gm-r1070-1784

8

1.17

1.66

3.46

1.86

0.27

0.37

Malate dehydrogenase, mitochondria

Gm-r1021-57

6

7.96

1.93

23.12

10.29

1.82

4.12

Malate dehydrogenase, mitochondria

AF068689

6

5.39

5.51

9.42

6.71

1.30

2.49

Malate dehydrogenase, ATP binding

Gm-r1088-7885

9

0.19

0.15

0.05

0.03

0.01

0.02

Malate synthase, glyoxysomal

Gm-r1070-7761

2

3.62

4.86

2.78

2.18

0.46

0.81

Malate synthase, glyoxysomal

Gm-r1088-2873

8

2.38

2.56

4.03

2.32

0.41

0.47

Malate synthase, glyoxysomal

Gm-r1070-8044

8

4.24

5.48

5.85

2.63

0.23

0.60

NADPH-specific isocitrate dehydrogenase

Gm-r1021-3472

8

1.77

1.72

2.77

1.74

0.33

0.83

Oxalyl-CoA decarboxylase

Gm-r1089-8230

7

1.03

0.55

1.43

0.07

0.22

1.47

Oxoglutarate malate translocator

Gm-c1062-4128

6

7.38

17.38

15.24

11.81

3.38

2.06

Peroxiredoxin

Gm-r1021-6

6

6.87

9.76

22.85

22.03

13.72

4.03

Phosphoglycerate kinase

Gm-r1083-1861

12

2.97

1.89

4.54

26.45

16.3

3.17

Phytochrome A

Gm-r1089-5497

6

10.09

16.54

21.62

8.51

5.55

3.35

Polygalacturonase

Gm-r1021-1072

6

25.88

14.38

52.60

31.02

38.59

4.09

Probable lipid transfer protein M30 precursor

Gm-r1089-5540

6

9.71

8.64

12.78

14.57

3.87

1.83

Probable mitotic control protein dis3

Gm-r1070-9203

8

1.49

3.94

2.18

2.15

0.40

0.89

Putative bHLH transcription factor

Gm-c1028-1591

8

6.98

9.76

5.59

1.03

0.40

0.43

Putative cell division related protein

Gm-r1083-1257

8

1.29

2.29

3.22

0.61

0.58

0.35

Putative lipase

Gm-c1013-3043

6

6.73

3.52

16.43

17.29

4.92

2.16

Putative protein phosphatase-2C

Gm-r1021-519

4

0.70

0.26

0.11

1.72

2.20

2.26

Ribonucleotide reductase R2

Gm-r1083-349

8

3.29

12.00

15.27

3.04

0.13

0.22

RUB1 conjugating enzyme

Gm-r1088-5674

6

1.62

1.85

3.17

2.09

1.26

2.42

Rubisco

Gm-c1069-8064

12

106.5

170.0

2,085

1,324

1,478

1,617

Rubisco small chain precursor

Gm-c1047-446

12

51.70

149.40

1210.00

1110.00

1489.00

861.40

RuBisCO-associated protein

Gm-r1021-1539

6

2.62

1.86

16.54

3.32

2.21

0.93

Seed maturation protein LEA 4

Gm-c1068-7258

9

0.20

0.14

0.11

0.06

0.02

0.03

Transcription factor BTF3

Gm-r1021-739

6

3.31

6.98

10.87

6.03

2.15

1.51

Transcription factor EIL2

Gm-c1020-311

1

5.01

2.78

7.41

0.62

2.44

2.44

Transcription factor lim1

Gm-r1088-3755

6

10.85

16.00

35.32

27.99

8.34

5.18

Transcription factor RAU1

Gm-r1088-6520

6

8.82

12.84

21.78

5.62

2.85

13.14

Transcription regulator protein SNF2

Gm-c1064-4573

6

3.02

13.31

3.76

4.00

1.30

2.18

Transcription repressor ROM1

Gm-r1088-612

6

1.14

3.33

3.53

3.42

1.08

2.19

Tubulin a-1 chain

Gm-r1021-3527

6

1.30

1.97

6.37

6.54

1.39

1.24

Ubiquinol-cytochrome C reductase

Gm-r1070-5286

6

3.19

4.62

5.89

7.84

1.73

1.37

Unknownc

Gm-c1044-260

4

0.51

ND

0.148

0.404

1.353

2.419

Unknownc

Gm-c1032-1982

8

4.66

10.54

7.552

1.495

0.169

0.675

Unknownc

Gm-r1070-6924

2

1.96

2.571

14.35

7.514

0.778

0.773

a Set number assigned from cluster analysis by k-means

b X/1 Indicates expression ratio of specific stage X (2–7) to stage 1 (reference tissue). n = 8

c Clones validated by RNA gel blot analysis

d Clones validated by RNA gel blot analysis and qRTPCR

Gonzalez and Vodkin BMC Genomics 2007 8:468   doi:10.1186/1471-2164-8-468

Open Data