|
Protein domains of genes identified by RaSH |
|||||
| Gene |
Amino acids |
Protein domain |
E-value |
% aligned |
Position |
|
|
|||||
| cpc2 |
292 |
WD40 |
2.0E-60 |
93.1% |
3–286 |
| phr1 |
591 |
Deoxyribodipyrimidine photolyase |
7.0E-124 |
99.3% |
96–584 |
| FAD_binding_7 |
2.0E-97 |
100% |
316–587 |
||
| rpl7 |
248 |
Ribosomal_L7 |
5.0E-66 |
100% |
88–247 |
| Ribosomal_L30 |
2.0E-14 |
100% |
87–139 |
||
| ubi4 |
305 |
Ubiquitin |
7.0E-33 |
100% |
1–76 |
| Ubiquitin |
7.0E-33 |
100% |
77–152 |
||
| Ubiquitin |
7.0E-33 |
100% |
153–228 |
||
| Ubiquitin |
7.0E-33 |
100% |
229–304 |
||
| tre9347 |
700 |
NAD_synthase |
3.0E-59 |
99.2% |
328–653 |
| Carbon-nitrogen hydrolase |
1.0E-18 |
100% |
6–201 |
||
| Predicted amidohydrolase |
4.0E-27 |
91.6% |
5–282 |
||
| tre10571 |
534 |
Major facilitator superfamily MFS_1 |
4.0E-12 |
100% |
31–443 |
| Arabinose efflux permease |
7.0E-13 |
46.7% |
26–208 |
||
| Fungal trichothecene efflux pump (TRI12) |
2.0E-06 |
34.3% |
102–303 |
||
| tre16112 |
304 |
Hydroxybenzoate polyprenyltransferase |
2.0E-32 |
99.7% |
2–289 |
| UbiA prenyltransferase family |
5.0E-23 |
100% |
24–301 |
||
| tre20863 |
648 |
Succinate dehydrogenase/fumarate reductase |
2.0E-168 |
100% |
56–631 |
| FAD binding domain |
2.0E-140 |
99.4% |
162–492 |
||
| Aspartate oxidase |
1.0E-92 |
93.8% |
85–618 |
||
| Fumarate reductase/succinate dehydrogenase flavoprotein C-terminal domain |
4.0E-44 |
100% |
513–648 |
||
| tre22454 |
180 |
NTPase/HAM1 |
1.0E-54 |
100% |
5–178 |
| Xanthosine triphosphate pyrophosphatase |
2.0E-45 |
96.9% |
5–180 |
||
| tre22667 |
193 |
Ribosomal protein L6P/L9E |
4.0E-30 |
97.2% |
1–187 |
| Ribosomal protein L6 |
7.0E-07 |
100% |
97–180 |
||
| tre31929 |
270 |
Adenylate kinase |
3.0E-75 |
100% |
44–231 |
| Adenylate kinase, active site lid |
2.0E-12 |
100% |
167–202 |
||
| tre35050 |
104 |
- |
- |
- |
- |
| tre39031 |
711 |
Peptidase_M49 |
6.0E-170 |
98.8% |
143–709 |
| tre39397 |
465 |
Sugar (and other) transporter |
7.0E-13 |
87.1% |
44–462 |
| tre40105 |
331 |
- |
- |
- |
- |
| tre41865 |
183 |
Perilipin |
2.0E-04 |
27.4% |
15–110 |
| tre42719 |
537 |
IMP dehydrogenase/GMP reductase domain |
1.0E-159 |
99.4% |
42–526 |
| CBS domain |
3.0E-13 |
93.2% |
130–236 |
||
| Predicted transcriptional regulator |
7.0E-09 |
36.7% |
130–238 |
||
| NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding superfamily domain |
1.0E-04 |
99.1% |
195–397 |
||
| tre45629 |
356 |
Porphyromonas-type peptidyl-arginine deiminase |
1.0E-67 |
100% |
6–353 |
| tre72859 |
114 |
- |
- |
- |
- |
Schuster et al. BMC Genomics 2007 8:449 doi:10.1186/1471-2164-8-449 |
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