Table 1 |
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Domain detection by InterProScan for characterizing of no-hit clones a |
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Clone name b |
Accession |
Name |
E value |
|
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PnFL1-083_I10 |
IPR012336 |
Thioredoxin-like fold |
0.0069 |
|
PnFL2-001_C15 |
IPR000480 |
Glutelin |
5.40E-06 |
|
PnFL2-003_H05 |
IPR001810 |
Cyclin-like F-box |
0.0014 |
|
PnFL2-004_G12 |
IPR007836 |
Ribosomal protein L41 |
1.60E-08 |
|
PnFL2-009_G19 |
IPR006031 |
XYPPX repeat |
19 |
|
PnFL2-009_I06 |
IPR003882 |
Pistil-specific extensin-like protein |
1.60E-07 |
|
PnFL2-010_B02 |
IPR006031 |
XYPPX repeat |
64 |
|
PnFL2-010_P09 |
IPR006121 |
Heavy metal transport/detoxification protein |
1.00E-09 |
|
PnFL2-013_P01 |
IPR000772 |
Ricin B lectin |
2.20E-23 |
|
IPR008997 |
Ricin B-related lectin |
1.40E-30 |
|
|
PnFL2-016_G15 |
IPR010978 |
tRNA-binding arm |
0.0046 |
|
PnFL2-021_F12 |
IPR000480 |
Glutelin |
9.90E-05 |
|
PnFL2-021_J01 |
IPR000167 |
Dehydrin |
0.00011 |
|
PnFL2-026_J14 |
IPR001627 |
Semaphorin/CD100 antigen |
9.042 |
|
PnFL2-028_L04 |
IPR000480 |
Glutelin |
9.90E-05 |
|
PnFL2-032_H01 |
IPR000048 |
IQ calmodulin-binding region |
7.401 |
|
PnFL2-034_F13 |
IPR000480 |
Glutelin |
6.50E-07 |
|
IPR000976 |
Wilm's tumour protein |
9.60E-05 |
|
|
IPR006706 |
Extensin-like region |
1.20E-31 |
|
|
PnFL2-034_J01 |
IPR010978 |
tRNA-binding arm |
0.0046 |
|
PnFL2-036_J14 |
IPR001810 |
Cyclin-like F-box |
5.50E-05 |
|
PnFL2-046_A21 |
IPR000772 |
Ricin B lectin |
2.20E-23 |
|
IPR008997 |
Ricin B-related lectin |
1.40E-30 |
|
|
PnFL2-046_B04 |
IPR000480 |
Glutelin |
4.50E-07 |
|
PnFL2-048_D17 |
IPR006031 |
XYPPX repeat |
64 |
|
PnFL2-048_H02 |
IPR000048 |
IQ calmodulin-binding region |
7.401 |
|
PnFL2-055_F11 |
IPR003267 |
Small proline-rich |
3.10E-05 |
|
PnFL2-064_O17 |
IPR000480 |
Glutelin |
1.90E-05 |
|
IPR003882 |
Pistil-specific extensin-like protein |
5.00E-06 |
|
|
PnFL2-067_N14 |
IPR009424 |
Protein of unknown function DUF1070 |
1.10E-27 |
|
PnFL2-075_P11 |
IPR001810 |
Cyclin-like F-box |
5.90E-05 |
|
PnFL2-076_H24 |
IPR006031 |
XYPPX repeat |
19 |
|
PnFL2-077_G19 |
IPR001878 |
Zinc finger, CCHC-type |
1.70E-06 |
|
PnFL2-078_N14 |
IPR001179 |
Peptidylprolyl isomerase, FKBP-type |
0.00067 |
|
PnFL2-079_I20 |
IPR006077 |
Vinculin/alpha-catenin |
2.40E-05 |
|
PnFL2-087_M22 |
IPR000048 |
IQ calmodulin-binding region |
7.401 |
|
PnFL2-090_P08 |
IPR008011 |
Complex 1 LYR protein |
3.70E-15 |
|
PnFL2-098_J19 |
IPR002885 |
Pentatricopeptide repeat |
2.80E-08 |
|
PnFL2-102_L04 |
IPR000480 |
Glutelin |
1.30E-06 |
|
IPR003882 |
Pistil-specific extensin-like protein |
1.90E-07 |
|
|
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a Substituted P. trichocarpa CDS for PnFL ESTs were subjected to the InterProScan program. This table corresponds to 'annotation list c ' in Fig. 2. b PnFL clones whose substitutive sequences have at least one hit are listed. |
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Nanjo et al. BMC Genomics 2007 8:448 doi:10.1186/1471-2164-8-448 |
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