Table 6

Transcripts (TFR pool) related to carbohydrate metabolism and transport categorized by the first hit in the MIPS2 catalog
Probeset ID	GenBank Annotation	VvGI5	UniProt ID	Gene Name Description	Function	Profile	Fold Change

1618061_a_at	CF514699	TC52548	O78327	Transketolase	Amino Acids Metabolism	20	3.44
1614105_at	CB968800	TC70460	Q4JIY3	Pyruvate dehydrogenase	Amino Acids Metabolism	11	2.2
1616700_at	CB910092	TC53526	Q9SLY2	Sucrose synthase	Carbohydrate metabolism	3	227.67
1611613_at	BQ796771	TC60693	Q9S944	Invertase	Carbohydrate metabolism	3	61.86
1622656_at	CF215745	TC61716	Q5NA70	Glucan endo-1,3-b-glucosidase	Carbohydrate metabolism	2	53.85
1614716_at	CB978853	TC58640	Q6Z8F4	Phosphoribulokinase	Carbohydrate metabolism	12	51.76
1617719_at	CB975632	TC55314	Q6IV07	UDP-glucose:protein transglucosylase	Carbohydrate metabolism	2	40.93
1607442_at	CF403717	-	Q50HW0	Glucuronosyltransferase	Carbohydrate metabolism	2	38.54
1622115_at	CD004218	TC60627	Q9SRX8	b-glucosidase	Carbohydrate metabolism	10	26.34
1611970_at	CF207195	TC62847	Q9LKY6	Glucose acyltransferase	Carbohydrate metabolism	3	25.74
1620679_at	CB972076	TC53351	Q9LV33	b-glucosidase	Carbohydrate metabolism	14	16.26
1621352_at	BQ794457	TC59789	Q8GT41	Invertase inhibitor	Carbohydrate metabolism	11	16.06
1608932_at	CB982469	TC63201	Q59J80	Glucosyltransferase	Carbohydrate metabolism	11	15.38
1620347_at	CA814065	TC66065	Q5QPZ6	Glycosyltransferase	Carbohydrate metabolism	10	15.36
1622282_at	CD712313	TC54393	Q7XAE2	Fructokinase	Carbohydrate metabolism	2	13.54
1616642_at	BQ800221	TC64250	Q9FEP9	Glycerol-3-phosphate acyltransferase	Carbohydrate metabolism	16	11.07
1616255_at	CF516475	TC57339	O82616	Fructokinase	Carbohydrate metabolism	12	10.13
1612918_at	CB972844	TC52651	Q9MBD7	NAD-dependent sorbitol dehydrogenase	Carbohydrate metabolism	2	9.14
1608393_at	CF403620	TC64860	O22658	ADP-glucose pyrophosphorylase	Carbohydrate metabolism	7	8.79
1621067_at	CF511425	TC51908	Q8W3C8	Glucose acyltransferase	Carbohydrate metabolism	3	8.2
1612883_at	CB911656	TC60606	O22060	Sucrose-phosphate synthase 1	Carbohydrate metabolism	16	7.92
1617035_s_at	CF205538	TC64995	Q9XGN4	Galactinol synthase	Carbohydrate metabolism	11	7.73
1609652_s_at	CF215703	TC59328	Q9FNI7	Glucosyltransferase	Carbohydrate metabolism	3	7.5
1617309_at	CB922444	TC59505	Q8LFT7	Aldehyde dehydrogenase	Carbohydrate metabolism	10	7.26
1619190_at	CD720196	TC54797	Q6H5W0	Alcohol dehydrogenase	Carbohydrate metabolism	3	6.66
1616107_s_at	CD715446	TC67979	Q94EU9	b-amylase	Carbohydrate metabolism	9	6.34
1618409_at	CF514784	TC52918	Q94G86	Glucan endo-1,3-b-glucosidase	Carbohydrate metabolism	3	6.26
1620624_at	CB969436	TC52478	Q94IP3	UDP-Glucose Transferase	Carbohydrate metabolism	2	6.21
1611680_at	CF415491	TC58448	Q50HU7	Glycosyltransferase	Carbohydrate metabolism	2	5.8
1612465_at	CF568806	TC53602	O65736	b-galactosidase	Carbohydrate metabolism	4	5.76
1618071_at	CF518536	TC54381	Q9M8Y0	O-linked GlcNAc transferase	Carbohydrate metabolism	16	5.7
1611804_at	CF513259	TC62252	Q9ZVX4	Glucose acyltransferase	Carbohydrate metabolism	12	5.52
1617454_at	BQ798893	-	Q8VYG2	Galactokinase	Carbohydrate metabolism	2	5.43
1612836_at	CF403299	TC57719	Q9S943	Invertase	Carbohydrate metabolism	3	5.28
1618517_at	CB971627	TC53602	Q93X58	b-galactosidase	Carbohydrate metabolism	4	5.01
1622074_at	BQ794083	-	Q84JP7	Phosphoenolpyruvate carboxylase kinase	Carbohydrate metabolism	12	4.66
1615571_at	CB983156	TC53551	Q9FNF2	Starch synthase	Carbohydrate metabolism	9	4.58
1622543_at	CB977855	TC61696	Q84V96	Aldehyde dehydrogenase	Carbohydrate metabolism	1	4.57
1610724_at	CB916342	TC63651	Q652S1	Fructose/tagatose bisphosphate aldolase	Carbohydrate metabolism	11	4.57
1620997_at	CD799067	TC63159	Q84LI1	Galactose dehydrogenase	Carbohydrate metabolism	2	4.55
1619223_s_at	CB005867	TC52910	Q9SLS2	Sucrose synthase	Carbohydrate metabolism	2	4.46
1615614_at	CF405918	TC54197	Q9M3I0	Glucosyltransferase	Carbohydrate metabolism	2	4.28
1622065_at	CD801714	-	Q94FA7	Fructose-bisphosphatase	Carbohydrate metabolism	3	4.17
1622503_at	CF203022	TC69704	Q9ATW1	Mannitol dehydrogenase	Carbohydrate metabolism	1	4.16
1615634_at	CB970085	TC69016	Q8L9U9	Glucose acyltransferase	Carbohydrate metabolism	12	3.86
1607324_at	CD719348	TC54773	P94078	a-mannosidase	Carbohydrate metabolism	2	3.85
1611112_at	CB971308	TC51885	Q7XPW5	Phosphomannomutase	Carbohydrate metabolism	3	3.85
1616325_at	CF211815	TC53040	Q6Q2Z9	Phosphoenolpyruvate carboxylase	Carbohydrate metabolism	3	3.84
1617068_at	CF519166	TC54621	Q9SGX4	Water dikinase	Carbohydrate metabolism	18	3.8
1611604_at	CB916873	TC54851	Q8LPJ3	a-mannosidase	Carbohydrate metabolism	3	3.78
1620724_at	CB915307	TC66445	O48628	Phosphofructo-1-kinase	Carbohydrate metabolism	11	3.73
1616500_at	AF194175	TC52882	Q9FZ00	Alcohol dehydrogenase	Carbohydrate metabolism	10	3.69
1612870_s_at	CF201540	TC66152	Q0DAH4	GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase	Carbohydrate metabolism	3	3.66
1608527_at	CF515950	TC58983	Q9FJ95	Sorbitol dehydrogenase	Carbohydrate metabolism	10	3.6
1619457_at	CB969731	TC63406	P93653	Trehalose-6-phosphate synthase	Carbohydrate metabolism	12	3.58
1611154_at	CF204490	-	Q42954	Pyruvate kinase	Carbohydrate metabolism	3	3.54
1614552_at	CB978862	TC54160	Q5SMZ1	Aldose 1-epimerase	Carbohydrate metabolism	12	3.52
1608263_a_at	BQ794795	TC51761	Q9M6B4	Alcohol dehydrogenase	Carbohydrate metabolism	11	3.5
1617186_at	CF415580	TC70119	O65856	Glucose-6-phosphate dehydrogenase	Carbohydrate metabolism	1	3.49
1608907_s_at	CA809004	TC51713	Q9XGN4	Galactinol synthase	Carbohydrate metabolism	11	3.4
1613182_at	CB982869	-	Q6PP98	Pyruvate dehydrogenase kinase	Carbohydrate metabolism	11	3.37
1612414_at	CD715284	TC58601	Q42910	Pyruvate phosphate dikinase	Carbohydrate metabolism	10	3.34
1622120_at	CF519014	TC54533	P27598	Starch phosphorylase	Carbohydrate metabolism	21	3.33
1606536_at	CB971452	-	Q8S9A7	Glucosyltransferase	Carbohydrate metabolism	3	3.29
1622606_at	CB910226	TC52786	Q6DW08	GDP-mannose pyrophosphorylase	Carbohydrate metabolism	3	3.28
1610766_at	CF212685	TC53291	Q7Y152	Galactokinase	Carbohydrate metabolism	11	3.24
1615270_at	CF208284	TC70917	Q6K963	Callose synthase	Carbohydrate metabolism	21	3.23
1615167_at	CF519116	TC65652	Q9LFQ0	Glycosylation enzyme	Carbohydrate metabolism	12	3.2
1606774_at	CF415165	TC70261	Q8L7J4	Pyruvate kinase	Carbohydrate metabolism	11	3.14
1609402_at	BQ794844	TC62599	Q9SLY2	Sucrose synthase	Carbohydrate metabolism	11	3.09
1608100_at	CF404013	TC51810	Q8S569	Phosphoenolpyruvate carboxylase	Carbohydrate metabolism	2	3.07
1609470_at	CF203556	-	Q8LFZ9	Sucrase	Carbohydrate metabolism	5	3.04
1614023_at	CF414667	-	P46275	Fructose-1,6-bisphosphatase	Carbohydrate metabolism	2	3.01
1618726_at	CF211103	TC60540	Q5JNJ1	Trehalose-6-phosphate synthase/phosphatase	Carbohydrate metabolism	4	3
1614982_at	CF211066	TC61602	Q9C9P3	GDP-mannose pyrophosphorylase	Carbohydrate metabolism	3	2.99
1616783_at	CF405837	TC58450	P93344	Aldehyde dehydrogenase	Carbohydrate metabolism	11	2.95
1616630_at	CF603093	TC56347	Q94LX9	Phosphoenolpyruvate carboxylase	Carbohydrate metabolism	16	2.95
1620905_at	CF215819	TC68052	Q6RK07	UDP-glucose dehydrogenase	Carbohydrate metabolism	21	2.89
1621861_at	CF209183	TC65564	Q94AS2	b-amylase	Carbohydrate metabolism	11	2.87
1613188_at	CA817889	TC70258	Q5BLY1	a-amylase	Carbohydrate metabolism	11	2.85
1608207_at	CB343787	TC63660	Q84V96	Aldehyde dehydrogenase	Carbohydrate metabolism	3	2.7
1611808_at	CF205006	TC67979	Q94EU9	b-amylase	Carbohydrate metabolism	9	2.69
1610410_at	CB342966	TC61245	O64733	Glucosyltransferase	Carbohydrate metabolism	9	2.67
1611851_at	BQ799617	TC52022	Q9FIK0	Phosphofructo-1-kinase	Carbohydrate metabolism	10	2.67
1609545_at	CF514819	TC52560	Q4R0T9	ADP-sugar diphosphatase	Carbohydrate metabolism	11	2.64
1617368_at	CF512540	-	E1313	Glucan endo-1,3-b-glucosidase	Carbohydrate metabolism	3	2.63
1615623_at	CF511813	TC55899	O64733	Glucose acyltransferase	Carbohydrate metabolism	2	2.63
1620375_at	CA814054	TC62155	Q8LK43	Glycogene synthase kinase-like kinase	Carbohydrate metabolism	7	2.58
1613601_at	CB978458	TC67353	O64927	Starch synthase	Carbohydrate metabolism	3	2.56
1618125_at	BQ798742	-	Q94KE3	Pyruvate kinase	Carbohydrate metabolism	16	2.52
1617941_at	CB914224	TC62494	O81505	Water dikinase	Carbohydrate metabolism	11	2.52
1621073_at	CB914439	TC55380	Q7XEL0	GDP-mannose-3",5"-epimerase	Carbohydrate metabolism	3	2.51
1620165_at	CA817563	TC56014	Q84YG5	Isoamylase	Carbohydrate metabolism	11	2.51
1613060_at	CF214238	TC53819	Q9M3B6	Pyruvate kinase	Carbohydrate metabolism	18	2.51
1620904_at	CF609568	TC58209	Q9SAD5	b-1,4-N-acetylglucosaminyltransferase	Carbohydrate metabolism	16	2.49
1611027_at	CB978747	TC56057	Q3L7K5	Invertase	Carbohydrate metabolism	20	2.49
1608995_at	BQ796616	TC54941	Q84NI6	a-galactosidase	Carbohydrate metabolism	11	2.48
1622806_at	CB009073	TC63769	Q6VWJ5	Fructokinase	Carbohydrate metabolism	1	2.48
1609510_at	CF513342	TC69905	Q0WV85	O-linked GlcNAc transferase	Carbohydrate metabolism	16	2.47
1609232_at	CA811215	TC56883	Q9ZVJ5	Phosphoglucomutase	Carbohydrate metabolism	15	2.45
1613514_s_at	CF202452	TC54941	Q9M442	a-galactosidase II	Carbohydrate metabolism	11	2.44
1613025_at	CF403382	TC69507	Q9SNY3	GDP-mannose 4,6 dehydratase 1	Carbohydrate metabolism	21	2.43
1614514_at	CF405361	TC66847	Q84V39	Glucan endo-1,3-b-glucosidase	Carbohydrate metabolism	2	2.42
1608156_at	CF207998	TC58210	Q9XEY7	Trehalase	Carbohydrate metabolism	11	2.4
1612056_at	BQ795970	-	Q5BMC5	Phosphomannose isomerase	Carbohydrate metabolism	19	2.39
1612295_at	CF512417	TC67968	Q5VMJ5	Pyrophosphate-dependent phosphofructo-1-kinase	Carbohydrate metabolism	15	2.38
1609079_at	BQ796278	TC60979	Q94KE3	Pyruvate kinase	Carbohydrate metabolism	13	2.36
1615874_at	CF403960	TC54126	Q93XR7	Fructose-6-phosphate,2-kinase\/fructose-2,6-bisphosphatase	Carbohydrate metabolism	2	2.35
1608883_at	CA818676	TC60515	Q94AA4	Pyrophosphate-dependent phosphofructo-1-kinase	Carbohydrate metabolism	15	2.34
1616002_s_at	CB345569	TC52261	Q8LL68	Aldolase	Carbohydrate metabolism	3	2.29
1620865_at	CB917214	TC66899	Q7XBE4	Enolase	Carbohydrate metabolism	11	2.29
1607147_at	CF404016	-	Q5BLY0	a-amylase	Carbohydrate metabolism	10	2.28
1607727_at	CB976321	TC57680	Q5IH14	Sucrose-6-phosphate phosphatase	Carbohydrate metabolism	11	2.26
1614707_at	BQ799313	TC53692	P32811	a-glucan phosphorylase	Carbohydrate metabolism	21	2.25
1610277_at	CF208016	TC70514	Q50HW6	b-1,3-glucuronosyltransferase	Carbohydrate metabolism	2	2.25
1621432_s_at	CD005042	TC52007	Q8VXZ7	a-galactosidase	Carbohydrate metabolism	10	2.18
1621053_at	CF414284	TC63955	Q6VWJ5	Fructokinase	Carbohydrate metabolism	3	2.16
1621719_at	CF404994	TC65554	Q8LGH6	Dihydrolipoamide S-acetyltransferase	Carbohydrate metabolism	3	2.14
1619373_at	CB920390	TC69024	P80572	Alcohol dehydrogenase	Carbohydrate metabolism	3	2.13
1614612_at	CF513589	TC63370	Q9LSG3	Glucose acyltransferase	Carbohydrate metabolism	2	2.13
1615252_at	BQ792622	TC60550	Q5N8H1	Hydrolase-like protein	Carbohydrate metabolism	3	2.08
1612568_at	CF405938	TC67425	Q9LIB2	Glycogen phosphorylase B	Carbohydrate metabolism	13	2.07
1614153_at	CF207979	TC54491	Q7EYK9	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate metabolism	4	2.03
1621378_at	BQ794342	TC61809	Q42581	Ribose-phosphate pyrophosphokinase 1	Nucleotide metabolism	11	4.5
1607578_at	CF415519	TC56533	O22141	Nucleotide sugar epimerase	Nucleotide metabolism	2	4.09
1608708_at	CF211873	TC53982	Q9SU83	Nucleotide pyrophosphatase	Nucleotide metabolism	18	3.73
1616669_at	CF209174	TC54382	Q3EAE2	dTDP-4-dehydrorhamnose reductase	Nucleotide metabolism	3	3.45
1609246_s_at	CF206363	TC54199	Q655Y8	UDP-glucose 4-epimerase	Nucleotide metabolism	4	3.14
1607889_a_at	CB976234	TC58106	Q6IVK4	UDP-glucuronate decarboxylase 2	Nucleotide metabolism	4	2.55
1622819_at	BQ798887	TC59368	O22141	Nucleotide sugar epimerase	Nucleotide metabolism	2	2.52
1616344_at	CF209136	TC68545	Q6XP48	UDP-glucose 4-epimerase	Nucleotide metabolism	21	2.52
1614498_at	CF213286	TC57825	O65781	UDP-galactose 4-epimerase	Nucleotide metabolism	21	2.32
1620930_s_at	CF212327	TC51843	Q6IVK4	UDP-glucuronate decarboxylase 2	Nucleotide metabolism	4	2.21
1614184_at	CF604220	TC66293	Q9SA77	UDP-galactose 4-epimerase	Nucleotide metabolism	21	2.13
1618478_at	CF515277	-	O64749	UDP-galactose-4-epimerase	Nucleotide metabolism	20	2.11
1616383_at	CF609704	TC59968	Q8L9F5	dTDP-glucose 4-6-dehydratase	Nucleotide metabolism	21	2.06
1615814_at	CB920915	TC56030	Q7FAH2	Glyceraldehyde-3-phosphate dehydrogenase	Phosphate Metabolism	10	2.87
1622715_s_at	CA809281	TC51781	P12858	Glyceraldehyde-3-phosphate dehydrogenase	Phosphate Metabolism	3	2.45
1618277_at	CF568829	TC56963	Q8VWN9	Glyceraldehyde-3-phosphate dehydrogenase	Phosphate Metabolism	21	2.22
1616083_at	CB009608	TC51694	Q9ZR63	Hexose transporter (VvHT1)	Transport	2	12.37
1610527_at	CA815926	TC52979	Q84QH3	Sorbitol transporter	Transport	2	5.49
1615257_at	CB972713	TC65400	Q4U339	Hexose transporter (VvHT6)	Transport	15	4.7
1619691_at	CF211807	TC62520	Q4U339	Hexose transporter (VvHT6)	Transport	14	3.69
1613408_at	CB347178	TC66667	P93075	Sucrose transporter (BvST1)	Transport	11	2.92
1608991_at	CA816013	TC60060	Q8GTR0	Sugar transporter	Transport	10	2.86
1610298_at	CB972367	TC53493	Q8LES0	Golgi nucleotide sugar transporter (GONST) 4	Transport	2	2.71
1615697_at	AF021810	TC51724	Q4JLW1	Sucrose transporter (VvSuc27)	Transport	3	2.44
1611331_at	CF201541	TC69532	Q69M22	Golgi nucleotide sugar transporter (GONST) 4	Transport	7	2.2
1612481_at	CF213270	-	Q6ID34	Glycerol 3-phosphate transporter	Transport	4	2.03

Deluc et al. BMC Genomics 2007 8:429 doi:10.1186/1471-2164-8-429