Table 5

USDA lineage contigs with library-specific expression patterns in non-normalized libraries.

Contig ID

MpGa

MpHb

MpNBc

MpWd

Total ESTs

Rtot e

Homology

E-value


1079

5

0

28

9

42

34.4

unknown protein

NA

3260

0

1

18

2

21

28

unknown protein

NA

8

0

42

1

13

56

68.2

unknown protein

NA

3100

0

35

0

5

40

66.9

unknown protein

NA

613

0

28

1

1

30

57.5

unknown protein

NA

375

0

17

0

1

18

35.3

unknown protein

NA

3414

0

15

0

0

15

34.2

unknown protein

NA

2753

0

18

0

3

21

33.7

unknown protein

NA

3104

0

20

1

6

27

31.8

unknown protein

NA

3194

0

17

0

3

20

31.6

unknown protein

NA

3319

0

13

0

2

15

24.6

unknown protein

NA

2148

0

10

0

0

10

22.8

unknown protein

NA

614

0

9

0

0

9

20.5

unknown protein

NA

844

0

10

0

3

13

17

unknown protein

NA

1196

23

0

0

2

25

46.2

glutathione S transferase S1

1E-53

130

33

0

3

15

51

46.1

unknown protein

NA

448

16

0

0

1

17

33

unknown protein

NA

254

20

0

0

11

31

30

cathepsin B-N

0

3427

16

0

1

2

19

29

densovirus structural protein

1E-46

256

9

0

0

0

9

20.5

cathepsin B-N

1E-161


aMpG = digestive tract (gut) library; bMpH = head library; cMpNB = whole body library, reared on N. benthamiana; dMpW = whole body library, reared on A. thaliana; eRtot = likelihood ratio statistic [34].

Ramsey et al. BMC Genomics 2007 8:423   doi:10.1186/1471-2164-8-423

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