Table 3

Clover Cis-Element Over-Representation: Common Enriched TFBSs Among Species

TFBSs (PWM)

Rat

Mouse

Human


Raw Score

p

Raw Score

p

Raw Score

p


V$SP1_Q6_01

177

0.017

235

< 0.001

217

< 0.001

V$SP1_Q2_01

192

0.031

248

< 0.001

240

< 0.001

V$SP1_Q4_01

188

0.038

256

< 0.001

231

< 0.001

V$SP1_Q6

175

0.043

242

< 0.001

235

< 0.001

Background Sequences:

9,201 Rat Promoter Sequences (9,215,186 bp; 51.4% GC)

9,475 Mouse Promoter Sequences (9,483,474 bp; 49.2% GC)

12,367 Human Promoter Sequences (12,379,367 bp; 53.5% GC)

Experimental Promoters:

133 Rat Promoters (51.6% GC)

144 Mouse Promoters (51.4% GC)

159 Human Promoters (54.7% GC)


Collins and Hu BMC Genomics 2007 8:420   doi:10.1186/1471-2164-8-420

Open Data