Table 5 |
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|
Vector contamination in ESTs sampled from dbEST |
|||
|
Vector |
a# Contaminated ESTs |
b# ESTs |
cRatio |
|
|
|||
|
pT7T3D-PacI |
20 |
3883 |
0.52% |
|
pSPORT1 |
99 |
3784 |
2.62% |
|
pCMVSPORT6.0 |
17 |
4784 |
0.36% |
|
pME18S-FL |
13 |
3382 |
0.38% |
|
pUC18 |
17 |
1618 |
1.05% |
|
pCS107 |
3 |
1198 |
0.25% |
|
PBRcDNASfiIAB |
5 |
1177 |
0.42% |
|
pBluescriptSK(-) |
20 |
2494 |
0.80% |
|
pDNR-LIB |
24 |
1817 |
1.32% |
|
pOTB7 |
6 |
891 |
0.67% |
|
pBluescriptIISK(+) |
27 |
2516 |
1.07% |
|
pBK-CMV |
11 |
783 |
1.40% |
|
pBluescriptSK(+) |
11 |
713 |
1.54% |
|
pExpress-1 |
19 |
1507 |
1.26% |
|
pBluescriptIIKS(+) |
7 |
689 |
1.02% |
|
pcDNA3.1(+/-) |
8 |
469 |
1.71% |
|
pCMV-SPORT6.1 |
186 |
1676 |
11.10% |
|
pTriplEx2 |
60 |
545 |
11.01% |
|
pDONR222 |
20 |
516 |
3.88% |
|
pCS108 |
1 |
362 |
0.28% |
|
pT7T3D |
1 |
559 |
0.18% |
|
|
|||
|
Total |
575 |
35363 |
1.63%d |
|
|
|||
|
aNumber of ESTs which were cloned into the indicated vector remained to be contaminated with vector. bNumber of ESTs using the indicated vector were subjected to BLAST analysis for identification of vector contamination cpercentage of vector contamination for the ESTs using the same cloning vector. dpercetage obtained by 575/35363 = 1.63% |
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|
Chen et al. BMC Genomics 2007 8:416 doi:10.1186/1471-2164-8-416 |
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