Table 1

Effects of SeqClean on phred-treated EST against CVS or RVS form of the vector sequence

SeqClean


CVS

RVS


Number of ESTs to trim

6035

6035

Number trashed

239

143

Number of incompletely trimmed ESTs

1118

2

% incomplete trimminga

18.5%

0.0%


a % of incomplete trimming was obtained by dividing the number of incompletely trimmed ESTs by the number of ESTs to trim. For example, the percentage of incompletely trimmed ESTs in the CVS column was calculated as: 1118/6035 × 100%.

Chen et al. BMC Genomics 2007 8:416   doi:10.1186/1471-2164-8-416

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