Table 3

Consensus TIR sequences of M. truncatula PIF/Harbinger-like elements

Family

Subfamily

TIR length

TIR sequence

MtPH-A5

21 bp

5' GGGKGYGTTTGTTTGAGGGTT 3'

MtPH-A6

1

15 bp

5' GGGTCCGTTTGGTTC 3'

2

15 bp

5' GGCTMTGTTTGGATT 3'

3

22 bp

5' GGGTCCGTTTGGTTCGAGARTT 3'

4

17 bp

5' GGCTTTGTTTGCGAGTT 3'

MtPH-D

12 bp

5' GGCTWTGTTTGG 3'

MtPH-E

22 bp

5' GGGCCTGTTTGRAACACTTTTT 3'

MtPH-M (MtMaster)

1

14 bp

5' GTGYRTGTTTGGYA 3'

2

14 bp

5' GYRYGTGTTTGGTT 3'

3

14 bp

5' GNSYSTGTTTGGTT 3'

Grzebelus et al. BMC Genomics 2007 8:409   doi:10.1186/1471-2164-8-409