|
Consensus TIR sequences of M. truncatula PIF/Harbinger-like elements |
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| Family |
Subfamily |
TIR length |
TIR sequence |
|
|
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| MtPH-A5 |
21 bp |
5' GGGKGYGTTTGTTTGAGGGTT 3' |
|
| MtPH-A6 |
1 |
15 bp |
5' GGGTCCGTTTGGTTC 3' |
| 2 |
15 bp |
5' GGCTMTGTTTGGATT 3' |
|
| 3 |
22 bp |
5' GGGTCCGTTTGGTTCGAGARTT 3' |
|
| 4 |
17 bp |
5' GGCTTTGTTTGCGAGTT 3' |
|
| MtPH-D |
12 bp |
5' GGCTWTGTTTGG 3' |
|
| MtPH-E |
22 bp |
5' GGGCCTGTTTGRAACACTTTTT 3' |
|
| MtPH-M (MtMaster) |
1 |
14 bp |
5' GTGYRTGTTTGGYA 3' |
| 2 |
14 bp |
5' GYRYGTGTTTGGTT 3' |
|
| 3 |
14 bp |
5' GNSYSTGTTTGGTT 3' |
|
Grzebelus et al. BMC Genomics 2007 8:409 doi:10.1186/1471-2164-8-409 |
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